Strain Fitness in Escherichia coli BL21 around ECD_01478

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01477 and ECD_01478 are separated by 206 nucleotidesECD_01478 and ECD_01479 are separated by 226 nucleotides ECD_01477: ECD_01477 - bestrophin family putative inner membrane protein, at 1,556,183 to 1,557,097 _01477 ECD_01478: ECD_01478 - altronate oxidoreductase, NAD-dependent, at 1,557,304 to 1,558,755 _01478 ECD_01479: ECD_01479 - putative membrane-bound diguanylate cyclase, at 1,558,982 to 1,559,929 _01479 Position (kb) 1557 1558 1559Strain fitness (log2 ratio) -1 0 1at 1557.320 kb on - strandat 1557.557 kb on + strand, within ECD_01478at 1557.667 kb on - strand, within ECD_01478at 1558.129 kb on - strand, within ECD_01478at 1558.745 kb on - strandat 1559.132 kb on - strand, within ECD_01479at 1559.356 kb on - strand, within ECD_01479at 1559.713 kb on - strand, within ECD_01479

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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1,557,320 - -0.4
1,557,557 + ECD_01478 0.17 +0.7
1,557,667 - ECD_01478 0.25 +0.3
1,558,129 - ECD_01478 0.57 -0.2
1,558,745 - +0.2
1,559,132 - ECD_01479 0.16 +0.0
1,559,356 - ECD_01479 0.39 +0.1
1,559,713 - ECD_01479 0.77 +0.4

Or see this region's nucleotide sequence