Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01380 and ECD_01381 are separated by 254 nucleotides ECD_01381 and ECD_01382 overlap by 80 nucleotides ECD_01382 and ECD_01383 are separated by 15 nucleotides ECD_01383 and ECD_01384 are separated by 62 nucleotides ECD_01384 and ECD_01385 overlap by 9 nucleotides
ECD_01380: ECD_01380 - putative metalloenzyme, at 1,449,350 to 1,450,693
_01380
ECD_01381: ECD_01381 - OPG biosynthetic periplasmic protein, at 1,450,948 to 1,452,573
_01381
ECD_01382: ECD_01382 - hypothetical protein, at 1,452,494 to 1,452,697
_01382
ECD_01383: ECD_01383 - DUF465 family protein, at 1,452,713 to 1,452,937
_01383
ECD_01384: ECD_01384 - ribosomal-protein-L7/L12-serine acetyltransferase, at 1,453,000 to 1,453,539
_01384
ECD_01385: ECD_01385 - uncharacterized protein, at 1,453,531 to 1,454,511
_01385
Position (kb)
1450
1451
1452
1453 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1450.846 kb on + strand at 1451.160 kb on + strand, within ECD_01381 at 1451.174 kb on - strand, within ECD_01381 at 1451.269 kb on - strand, within ECD_01381 at 1451.438 kb on + strand, within ECD_01381 at 1451.438 kb on + strand, within ECD_01381 at 1451.481 kb on + strand, within ECD_01381 at 1451.485 kb on + strand, within ECD_01381 at 1451.527 kb on + strand, within ECD_01381 at 1451.528 kb on - strand, within ECD_01381 at 1451.599 kb on - strand, within ECD_01381 at 1451.707 kb on + strand, within ECD_01381 at 1451.707 kb on + strand, within ECD_01381 at 1451.973 kb on + strand, within ECD_01381 at 1452.388 kb on - strand, within ECD_01381 at 1452.469 kb on + strand at 1452.469 kb on + strand at 1452.469 kb on + strand at 1452.470 kb on - strand at 1452.517 kb on + strand at 1452.547 kb on + strand at 1452.572 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,450,846 + -1.9 1,451,160 + ECD_01381 0.13 -0.6 1,451,174 - ECD_01381 0.14 -2.1 1,451,269 - ECD_01381 0.20 -1.5 1,451,438 + ECD_01381 0.30 -1.8 1,451,438 + ECD_01381 0.30 -2.0 1,451,481 + ECD_01381 0.33 -0.8 1,451,485 + ECD_01381 0.33 -0.6 1,451,527 + ECD_01381 0.36 -1.4 1,451,528 - ECD_01381 0.36 -0.4 1,451,599 - ECD_01381 0.40 -1.3 1,451,707 + ECD_01381 0.47 -0.4 1,451,707 + ECD_01381 0.47 -0.7 1,451,973 + ECD_01381 0.63 -2.0 1,452,388 - ECD_01381 0.89 -1.5 1,452,469 + -0.0 1,452,469 + -0.3 1,452,469 + -1.6 1,452,470 - -3.1 1,452,517 + -2.1 1,452,547 + +0.5 1,452,572 - +0.5
Or see this region's nucleotide sequence