Strain Fitness in Escherichia coli BL21 around ECD_01313
Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Mixed culture, Halobacteriovorax-10 |
---|---|---|---|---|---|
remove | |||||
1,384,460 | - | -0.3 | |||
1,384,460 | - | -0.3 | |||
1,385,090 | + | ECD_01312 | 0.39 | -0.2 | |
1,385,177 | - | ECD_01312 | 0.56 | -0.8 | |
1,385,200 | - | ECD_01312 | 0.60 | +0.1 | |
1,386,299 | - | ECD_01313 | 0.58 | -0.3 | |
1,386,312 | + | ECD_01313 | 0.59 | +0.5 | |
1,386,397 | - | ECD_01313 | 0.64 | -0.2 | |
1,386,557 | + | ECD_01313 | 0.75 | +0.2 | |
1,386,559 | + | ECD_01313 | 0.75 | +0.1 | |
1,386,616 | - | ECD_01313 | 0.79 | -0.5 | |
1,386,720 | + | ECD_01313 | 0.85 | +0.2 | |
1,386,895 | + | +1.9 | |||
1,387,074 | + | +1.1 | |||
1,387,151 | + | ECD_01314 | 0.12 | +0.3 | |
1,387,151 | + | ECD_01314 | 0.12 | -0.6 | |
1,387,184 | + | ECD_01314 | 0.14 | -0.4 | |
1,387,184 | + | ECD_01314 | 0.14 | +0.0 | |
1,387,189 | - | ECD_01314 | 0.15 | -0.2 | |
1,387,742 | + | ECD_01314 | 0.53 | +0.3 | |
1,387,742 | + | ECD_01314 | 0.53 | +1.3 |
Or see this region's nucleotide sequence