Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01300 and ECD_01301 are separated by 43 nucleotides ECD_01301 and ECD_01302 are separated by 118 nucleotides ECD_01302 and ECD_01303 overlap by 26 nucleotides
ECD_01300: ECD_01300 - aromatic amino acid biosynthesis and transport regulon transcriptional regulator; autorepressor; ATPase; phosphatase, at 1,373,087 to 1,374,628
_01300
ECD_01301: ECD_01301 - lipid hydroperoxide peroxidase, at 1,374,672 to 1,375,178
_01301
ECD_01302: ECD_01302 - L-Ala-D/L-Glu epimerase, at 1,375,297 to 1,376,262
_01302
ECD_01303: ECD_01303 - murein peptide amidase A, at 1,376,237 to 1,376,965
_01303
Position (kb) 1375
1376
1377 Strain fitness (log2 ratio) -1
0
1
2 at 1374.303 kb on + strand, within ECD_01300 at 1374.307 kb on + strand, within ECD_01300 at 1374.352 kb on + strand, within ECD_01300 at 1374.669 kb on - strand at 1374.827 kb on - strand, within ECD_01301 at 1374.933 kb on - strand, within ECD_01301 at 1375.334 kb on + strand at 1375.334 kb on + strand at 1375.334 kb on + strand at 1375.334 kb on + strand at 1375.413 kb on + strand, within ECD_01302 at 1375.414 kb on - strand, within ECD_01302 at 1375.983 kb on + strand, within ECD_01302 at 1376.034 kb on + strand, within ECD_01302 at 1376.130 kb on + strand, within ECD_01302 at 1376.131 kb on - strand, within ECD_01302 at 1376.589 kb on - strand, within ECD_01303 at 1376.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,374,303 + ECD_01300 0.79 +0.1 1,374,307 + ECD_01300 0.79 +1.6 1,374,352 + ECD_01300 0.82 +0.6 1,374,669 - +0.5 1,374,827 - ECD_01301 0.31 -0.3 1,374,933 - ECD_01301 0.51 +1.1 1,375,334 + +0.4 1,375,334 + -0.1 1,375,334 + +0.2 1,375,334 + +0.2 1,375,413 + ECD_01302 0.12 -0.1 1,375,414 - ECD_01302 0.12 -1.0 1,375,983 + ECD_01302 0.71 +2.0 1,376,034 + ECD_01302 0.76 +0.3 1,376,130 + ECD_01302 0.86 +0.7 1,376,131 - ECD_01302 0.86 -0.5 1,376,589 - ECD_01303 0.48 -1.0 1,376,988 - -0.3
Or see this region's nucleotide sequence