Strain Fitness in Escherichia coli BL21 around ECD_01234

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01232 and ECD_01233 are separated by 85 nucleotidesECD_01233 and ECD_01234 are separated by 380 nucleotidesECD_01234 and ECD_01235 overlap by 1 nucleotides ECD_01232: ECD_01232 - putative rubrerythrin/ferritin-like metal-binding protein, at 1,300,862 to 1,301,362 _01232 ECD_01233: ECD_01233 - KGG family protein, at 1,301,448 to 1,301,627 _01233 ECD_01234: ECD_01234 - tryptophan synthase, alpha subunit, at 1,302,008 to 1,302,814 _01234 ECD_01235: ECD_01235 - tryptophan synthase, beta subunit, at 1,302,814 to 1,304,007 _01235 Position (kb) 1302 1303Strain fitness (log2 ratio) -3 -2 -1 0 1at 1302.082 kb on + strandat 1302.511 kb on - strand, within ECD_01234at 1302.661 kb on + strand, within ECD_01234at 1303.449 kb on + strand, within ECD_01235at 1303.451 kb on + strand, within ECD_01235at 1303.452 kb on - strand, within ECD_01235at 1303.611 kb on - strand, within ECD_01235at 1303.611 kb on - strand, within ECD_01235at 1303.788 kb on - strand, within ECD_01235at 1303.813 kb on - strand, within ECD_01235

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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1,302,082 + -1.4
1,302,511 - ECD_01234 0.62 -2.1
1,302,661 + ECD_01234 0.81 -2.5
1,303,449 + ECD_01235 0.53 -1.1
1,303,451 + ECD_01235 0.53 -3.4
1,303,452 - ECD_01235 0.53 -1.8
1,303,611 - ECD_01235 0.67 -1.4
1,303,611 - ECD_01235 0.67 -0.5
1,303,788 - ECD_01235 0.82 -1.4
1,303,813 - ECD_01235 0.84 -2.0

Or see this region's nucleotide sequence