Strain Fitness in Escherichia coli BL21 around ECD_01104

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01103 and ECD_01104 are separated by 22 nucleotidesECD_01104 and ECD_01105 are separated by 407 nucleotides ECD_01103: ECD_01103 - beta N-acetyl-glucosaminidase, at 1,166,662 to 1,167,687 _01103 ECD_01104: ECD_01104 - putative UPF0227 family esterase, at 1,167,710 to 1,168,252 _01104 ECD_01105: ECD_01105 - respiratory NADH dehydrogenase 2/cupric reductase, at 1,168,660 to 1,169,964 _01105 Position (kb) 1167 1168 1169Strain fitness (log2 ratio) -2 -1 0 1at 1166.767 kb on + strand, within ECD_01103at 1167.241 kb on - strand, within ECD_01103at 1167.697 kb on - strandat 1167.795 kb on + strand, within ECD_01104at 1167.804 kb on + strand, within ECD_01104at 1168.417 kb on - strandat 1168.767 kb on + strandat 1169.207 kb on + strand, within ECD_01105

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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1,166,767 + ECD_01103 0.10 +0.0
1,167,241 - ECD_01103 0.56 -1.9
1,167,697 - +0.4
1,167,795 + ECD_01104 0.16 -1.0
1,167,804 + ECD_01104 0.17 -0.9
1,168,417 - -0.3
1,168,767 + +0.1
1,169,207 + ECD_01105 0.42 +1.0

Or see this region's nucleotide sequence