Strain Fitness in Escherichia coli BL21 around ECD_01080

Experiment: Mixed culture, Halobacteriovorax-10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01079 and ECD_01080 are separated by 195 nucleotidesECD_01080 and ECD_01081 are separated by 134 nucleotidesECD_01081 and ECD_01082 are separated by 117 nucleotides ECD_01079: ECD_01079 - flagellar hook-filament junction protein, at 1,142,600 to 1,143,553 _01079 ECD_01080: ECD_01080 - endoribonuclease; RNA-binding protein, at 1,143,749 to 1,146,934 _01080 ECD_01081: ECD_01081 - uncharacterized protein, at 1,147,069 to 1,147,389 _01081 ECD_01082: ECD_01082 - 23S rRNA pseudouridine(955,2504,2580) synthase, at 1,147,507 to 1,148,466 _01082 Position (kb) 1143 1144 1145 1146 1147Strain fitness (log2 ratio) -2 -1 0 1at 1142.783 kb on + strand, within ECD_01079at 1142.835 kb on + strand, within ECD_01079at 1142.835 kb on + strand, within ECD_01079at 1142.839 kb on + strand, within ECD_01079at 1143.056 kb on + strand, within ECD_01079at 1143.056 kb on + strand, within ECD_01079at 1143.114 kb on + strand, within ECD_01079at 1143.145 kb on + strand, within ECD_01079at 1143.289 kb on + strand, within ECD_01079at 1143.348 kb on + strand, within ECD_01079at 1143.348 kb on + strand, within ECD_01079at 1143.387 kb on + strand, within ECD_01079at 1143.500 kb on + strandat 1143.500 kb on + strandat 1143.502 kb on + strandat 1143.634 kb on + strandat 1143.748 kb on - strandat 1143.823 kb on + strandat 1144.035 kb on - strandat 1144.170 kb on - strand, within ECD_01080at 1144.341 kb on - strand, within ECD_01080at 1144.341 kb on - strand, within ECD_01080at 1144.374 kb on - strand, within ECD_01080at 1145.011 kb on + strand, within ECD_01080at 1145.269 kb on + strand, within ECD_01080at 1145.436 kb on + strand, within ECD_01080at 1145.436 kb on + strand, within ECD_01080at 1145.437 kb on - strand, within ECD_01080at 1145.437 kb on - strand, within ECD_01080at 1145.437 kb on - strand, within ECD_01080at 1147.133 kb on - strand, within ECD_01081at 1147.205 kb on - strand, within ECD_01081at 1147.327 kb on - strand, within ECD_01081at 1147.327 kb on - strand, within ECD_01081at 1147.431 kb on - strandat 1147.452 kb on + strandat 1147.569 kb on + strandat 1147.665 kb on + strand, within ECD_01082at 1147.668 kb on + strand, within ECD_01082at 1147.707 kb on + strand, within ECD_01082at 1147.793 kb on + strand, within ECD_01082at 1147.793 kb on + strand, within ECD_01082at 1147.793 kb on + strand, within ECD_01082at 1147.795 kb on + strand, within ECD_01082at 1147.844 kb on + strand, within ECD_01082at 1147.862 kb on + strand, within ECD_01082

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
remove
1,142,783 + ECD_01079 0.19 -0.3
1,142,835 + ECD_01079 0.25 +0.6
1,142,835 + ECD_01079 0.25 +0.1
1,142,839 + ECD_01079 0.25 -0.2
1,143,056 + ECD_01079 0.48 +0.0
1,143,056 + ECD_01079 0.48 -0.5
1,143,114 + ECD_01079 0.54 -0.1
1,143,145 + ECD_01079 0.57 +0.0
1,143,289 + ECD_01079 0.72 -1.2
1,143,348 + ECD_01079 0.78 -0.0
1,143,348 + ECD_01079 0.78 -0.6
1,143,387 + ECD_01079 0.82 +0.4
1,143,500 + +0.1
1,143,500 + -0.0
1,143,502 + -0.1
1,143,634 + -0.3
1,143,748 - +0.2
1,143,823 + -0.1
1,144,035 - +0.2
1,144,170 - ECD_01080 0.13 -1.0
1,144,341 - ECD_01080 0.19 -0.1
1,144,341 - ECD_01080 0.19 +0.8
1,144,374 - ECD_01080 0.20 -0.2
1,145,011 + ECD_01080 0.40 -1.8
1,145,269 + ECD_01080 0.48 -1.0
1,145,436 + ECD_01080 0.53 -1.8
1,145,436 + ECD_01080 0.53 -0.3
1,145,437 - ECD_01080 0.53 -1.1
1,145,437 - ECD_01080 0.53 -1.4
1,145,437 - ECD_01080 0.53 -2.0
1,147,133 - ECD_01081 0.20 -1.3
1,147,205 - ECD_01081 0.42 +0.8
1,147,327 - ECD_01081 0.80 -0.3
1,147,327 - ECD_01081 0.80 +0.8
1,147,431 - +0.4
1,147,452 + +0.0
1,147,569 + +0.1
1,147,665 + ECD_01082 0.16 +0.3
1,147,668 + ECD_01082 0.17 -0.2
1,147,707 + ECD_01082 0.21 -0.3
1,147,793 + ECD_01082 0.30 +0.0
1,147,793 + ECD_01082 0.30 -0.4
1,147,793 + ECD_01082 0.30 +0.4
1,147,795 + ECD_01082 0.30 +0.6
1,147,844 + ECD_01082 0.35 -1.1
1,147,862 + ECD_01082 0.37 -0.9

Or see this region's nucleotide sequence