Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01079 and ECD_01080 are separated by 195 nucleotides ECD_01080 and ECD_01081 are separated by 134 nucleotides ECD_01081 and ECD_01082 are separated by 117 nucleotides
ECD_01079: ECD_01079 - flagellar hook-filament junction protein, at 1,142,600 to 1,143,553
_01079
ECD_01080: ECD_01080 - endoribonuclease; RNA-binding protein, at 1,143,749 to 1,146,934
_01080
ECD_01081: ECD_01081 - uncharacterized protein, at 1,147,069 to 1,147,389
_01081
ECD_01082: ECD_01082 - 23S rRNA pseudouridine(955,2504,2580) synthase, at 1,147,507 to 1,148,466
_01082
Position (kb)
1143
1144
1145
1146
1147 Strain fitness (log2 ratio)
-2
-1
0
1 at 1142.783 kb on + strand, within ECD_01079 at 1142.835 kb on + strand, within ECD_01079 at 1142.835 kb on + strand, within ECD_01079 at 1142.839 kb on + strand, within ECD_01079 at 1143.056 kb on + strand, within ECD_01079 at 1143.056 kb on + strand, within ECD_01079 at 1143.114 kb on + strand, within ECD_01079 at 1143.145 kb on + strand, within ECD_01079 at 1143.289 kb on + strand, within ECD_01079 at 1143.348 kb on + strand, within ECD_01079 at 1143.348 kb on + strand, within ECD_01079 at 1143.387 kb on + strand, within ECD_01079 at 1143.500 kb on + strand at 1143.500 kb on + strand at 1143.502 kb on + strand at 1143.634 kb on + strand at 1143.748 kb on - strand at 1143.823 kb on + strand at 1144.035 kb on - strand at 1144.170 kb on - strand, within ECD_01080 at 1144.341 kb on - strand, within ECD_01080 at 1144.341 kb on - strand, within ECD_01080 at 1144.374 kb on - strand, within ECD_01080 at 1145.011 kb on + strand, within ECD_01080 at 1145.269 kb on + strand, within ECD_01080 at 1145.436 kb on + strand, within ECD_01080 at 1145.436 kb on + strand, within ECD_01080 at 1145.437 kb on - strand, within ECD_01080 at 1145.437 kb on - strand, within ECD_01080 at 1145.437 kb on - strand, within ECD_01080 at 1147.133 kb on - strand, within ECD_01081 at 1147.205 kb on - strand, within ECD_01081 at 1147.327 kb on - strand, within ECD_01081 at 1147.327 kb on - strand, within ECD_01081 at 1147.431 kb on - strand at 1147.452 kb on + strand at 1147.569 kb on + strand at 1147.665 kb on + strand, within ECD_01082 at 1147.668 kb on + strand, within ECD_01082 at 1147.707 kb on + strand, within ECD_01082 at 1147.793 kb on + strand, within ECD_01082 at 1147.793 kb on + strand, within ECD_01082 at 1147.793 kb on + strand, within ECD_01082 at 1147.795 kb on + strand, within ECD_01082 at 1147.844 kb on + strand, within ECD_01082 at 1147.862 kb on + strand, within ECD_01082
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,142,783 + ECD_01079 0.19 -0.3 1,142,835 + ECD_01079 0.25 +0.6 1,142,835 + ECD_01079 0.25 +0.1 1,142,839 + ECD_01079 0.25 -0.2 1,143,056 + ECD_01079 0.48 +0.0 1,143,056 + ECD_01079 0.48 -0.5 1,143,114 + ECD_01079 0.54 -0.1 1,143,145 + ECD_01079 0.57 +0.0 1,143,289 + ECD_01079 0.72 -1.2 1,143,348 + ECD_01079 0.78 -0.0 1,143,348 + ECD_01079 0.78 -0.6 1,143,387 + ECD_01079 0.82 +0.4 1,143,500 + +0.1 1,143,500 + -0.0 1,143,502 + -0.1 1,143,634 + -0.3 1,143,748 - +0.2 1,143,823 + -0.1 1,144,035 - +0.2 1,144,170 - ECD_01080 0.13 -1.0 1,144,341 - ECD_01080 0.19 -0.1 1,144,341 - ECD_01080 0.19 +0.8 1,144,374 - ECD_01080 0.20 -0.2 1,145,011 + ECD_01080 0.40 -1.8 1,145,269 + ECD_01080 0.48 -1.0 1,145,436 + ECD_01080 0.53 -1.8 1,145,436 + ECD_01080 0.53 -0.3 1,145,437 - ECD_01080 0.53 -1.1 1,145,437 - ECD_01080 0.53 -1.4 1,145,437 - ECD_01080 0.53 -2.0 1,147,133 - ECD_01081 0.20 -1.3 1,147,205 - ECD_01081 0.42 +0.8 1,147,327 - ECD_01081 0.80 -0.3 1,147,327 - ECD_01081 0.80 +0.8 1,147,431 - +0.4 1,147,452 + +0.0 1,147,569 + +0.1 1,147,665 + ECD_01082 0.16 +0.3 1,147,668 + ECD_01082 0.17 -0.2 1,147,707 + ECD_01082 0.21 -0.3 1,147,793 + ECD_01082 0.30 +0.0 1,147,793 + ECD_01082 0.30 -0.4 1,147,793 + ECD_01082 0.30 +0.4 1,147,795 + ECD_01082 0.30 +0.6 1,147,844 + ECD_01082 0.35 -1.1 1,147,862 + ECD_01082 0.37 -0.9
Or see this region's nucleotide sequence