Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01055 and ECD_01056 are separated by 114 nucleotides ECD_01056 and ECD_01057 are separated by 289 nucleotides ECD_01057 and ECD_01058 are separated by 73 nucleotides ECD_01058 and ECD_01059 are separated by 105 nucleotides ECD_01059 and ECD_01060 are separated by 133 nucleotides
ECD_01055: ECD_01055 - N-methyltryptophan oxidase, FAD-binding, at 1,122,035 to 1,123,153
_01055
ECD_01056: ECD_01056 - biofilm regulator, at 1,123,268 to 1,123,522
_01056
ECD_01057: ECD_01057 - DNA damage-inducible protein I, at 1,123,812 to 1,124,057
_01057
ECD_01058: ECD_01058 - dihydro-orotase, at 1,124,131 to 1,125,177
_01058
ECD_01059: ECD_01059 - lipoprotein, DUF1439 family, at 1,125,283 to 1,125,843
_01059
ECD_01060: ECD_01060 - glutaredoxin 2 (Grx2), at 1,125,977 to 1,126,624
_01060
Position (kb) 1124
1125
1126 Strain fitness (log2 ratio) -1
0
1
2 at 1123.270 kb on - strand at 1123.270 kb on - strand at 1123.412 kb on - strand, within ECD_01056 at 1123.453 kb on - strand, within ECD_01056 at 1123.453 kb on - strand, within ECD_01056 at 1123.453 kb on - strand, within ECD_01056 at 1123.457 kb on - strand, within ECD_01056 at 1123.457 kb on - strand, within ECD_01056 at 1123.547 kb on - strand at 1124.058 kb on - strand at 1124.106 kb on + strand at 1124.106 kb on + strand at 1124.106 kb on + strand at 1124.230 kb on + strand at 1124.548 kb on - strand, within ECD_01058 at 1124.618 kb on + strand, within ECD_01058 at 1124.619 kb on - strand, within ECD_01058 at 1124.939 kb on + strand, within ECD_01058 at 1125.084 kb on - strand at 1125.387 kb on - strand, within ECD_01059 at 1125.387 kb on - strand, within ECD_01059 at 1125.387 kb on - strand, within ECD_01059 at 1125.771 kb on - strand, within ECD_01059 at 1125.787 kb on - strand, within ECD_01059 at 1126.101 kb on - strand, within ECD_01060
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,123,270 - -0.3 1,123,270 - +0.2 1,123,412 - ECD_01056 0.56 -0.7 1,123,453 - ECD_01056 0.73 -0.8 1,123,453 - ECD_01056 0.73 +0.0 1,123,453 - ECD_01056 0.73 -0.9 1,123,457 - ECD_01056 0.74 +0.0 1,123,457 - ECD_01056 0.74 +0.6 1,123,547 - +0.2 1,124,058 - +0.5 1,124,106 + -0.3 1,124,106 + +1.0 1,124,106 + -0.5 1,124,230 + -1.5 1,124,548 - ECD_01058 0.40 -0.3 1,124,618 + ECD_01058 0.47 -0.0 1,124,619 - ECD_01058 0.47 -0.8 1,124,939 + ECD_01058 0.77 -1.2 1,125,084 - -1.4 1,125,387 - ECD_01059 0.19 +0.9 1,125,387 - ECD_01059 0.19 +1.9 1,125,387 - ECD_01059 0.19 -0.6 1,125,771 - ECD_01059 0.87 +1.1 1,125,787 - ECD_01059 0.90 +1.1 1,126,101 - ECD_01060 0.19 -0.2
Or see this region's nucleotide sequence