Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01004 and ECD_01005 are separated by 282 nucleotides ECD_01005 and ECD_01006 are separated by 37 nucleotides ECD_01006 and ECD_01007 are separated by 20 nucleotides
ECD_01004: ECD_01004 - uncharacterized protein, at 1,068,324 to 1,069,583
_01004
ECD_01005: ECD_01005 - glucose-1-phosphatase/inositol phosphatase, at 1,069,866 to 1,071,107
_01005
ECD_01006: ECD_01006 - uncharacterized protein, at 1,071,145 to 1,071,372
_01006
ECD_01007: ECD_01007 - NAD(P)H:quinone oxidoreductase, at 1,071,393 to 1,071,989
_01007
Position (kb)
1069
1070
1071
1072 Strain fitness (log2 ratio)
-1
0
1 at 1069.880 kb on - strand at 1070.106 kb on + strand, within ECD_01005 at 1070.118 kb on + strand, within ECD_01005 at 1070.152 kb on + strand, within ECD_01005 at 1070.186 kb on - strand, within ECD_01005 at 1070.186 kb on - strand, within ECD_01005 at 1070.193 kb on + strand, within ECD_01005 at 1070.433 kb on + strand, within ECD_01005 at 1070.584 kb on - strand, within ECD_01005 at 1070.946 kb on + strand, within ECD_01005 at 1070.946 kb on + strand, within ECD_01005 at 1070.975 kb on + strand, within ECD_01005 at 1071.194 kb on - strand, within ECD_01006 at 1071.194 kb on - strand, within ECD_01006 at 1071.580 kb on - strand, within ECD_01007 at 1071.580 kb on - strand, within ECD_01007 at 1071.580 kb on - strand, within ECD_01007 at 1071.618 kb on - strand, within ECD_01007 at 1071.621 kb on - strand, within ECD_01007 at 1071.679 kb on + strand, within ECD_01007 at 1072.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 1,069,880 - +0.3 1,070,106 + ECD_01005 0.19 -0.4 1,070,118 + ECD_01005 0.20 +0.4 1,070,152 + ECD_01005 0.23 -0.0 1,070,186 - ECD_01005 0.26 +0.4 1,070,186 - ECD_01005 0.26 -0.5 1,070,193 + ECD_01005 0.26 +0.7 1,070,433 + ECD_01005 0.46 +0.6 1,070,584 - ECD_01005 0.58 -0.4 1,070,946 + ECD_01005 0.87 +0.7 1,070,946 + ECD_01005 0.87 +0.8 1,070,975 + ECD_01005 0.89 +0.6 1,071,194 - ECD_01006 0.21 +0.2 1,071,194 - ECD_01006 0.21 +0.7 1,071,580 - ECD_01007 0.31 +0.8 1,071,580 - ECD_01007 0.31 +0.2 1,071,580 - ECD_01007 0.31 +0.2 1,071,618 - ECD_01007 0.38 +0.5 1,071,621 - ECD_01007 0.38 +0.0 1,071,679 + ECD_01007 0.48 +0.4 1,072,010 - -0.2
Or see this region's nucleotide sequence