Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00930 and ECD_00931 are separated by 26 nucleotides ECD_00931 and ECD_00932 are separated by 221 nucleotides ECD_00932 and ECD_00933 are separated by 184 nucleotides
ECD_00930: ECD_00930 - M15A protease-related family periplasmic protein, at 988,165 to 988,713
_00930
ECD_00931: ECD_00931 - putative metal-binding enzyme, at 988,740 to 989,387
_00931
ECD_00932: ECD_00932 - aspartate aminotransferase, PLP-dependent, at 989,609 to 990,799
_00932
ECD_00933: ECD_00933 - outer membrane porin 1a (Ia, at 990,984 to 992,072
_00933
Position (kb) 989
990
991 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 988.657 kb on + strand, within ECD_00930 at 988.683 kb on + strand at 988.751 kb on + strand at 988.789 kb on + strand at 989.024 kb on + strand, within ECD_00931 at 989.119 kb on + strand, within ECD_00931 at 989.119 kb on + strand, within ECD_00931 at 989.212 kb on + strand, within ECD_00931 at 989.270 kb on + strand, within ECD_00931 at 989.299 kb on + strand, within ECD_00931 at 989.351 kb on + strand at 989.840 kb on - strand, within ECD_00932 at 991.070 kb on - strand at 991.079 kb on - strand at 991.079 kb on - strand at 991.184 kb on - strand, within ECD_00933 at 991.331 kb on - strand, within ECD_00933 at 991.436 kb on - strand, within ECD_00933 at 991.476 kb on - strand, within ECD_00933 at 991.587 kb on - strand, within ECD_00933 at 991.592 kb on - strand, within ECD_00933 at 991.592 kb on - strand, within ECD_00933 at 991.596 kb on - strand, within ECD_00933 at 991.596 kb on - strand, within ECD_00933 at 991.637 kb on - strand, within ECD_00933 at 991.691 kb on - strand, within ECD_00933 at 991.703 kb on - strand, within ECD_00933 at 991.703 kb on - strand, within ECD_00933 at 991.739 kb on - strand, within ECD_00933 at 991.743 kb on - strand, within ECD_00933 at 991.743 kb on - strand, within ECD_00933
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 988,657 + ECD_00930 0.90 -0.7 988,683 + +1.4 988,751 + +0.3 988,789 + -1.0 989,024 + ECD_00931 0.44 +0.2 989,119 + ECD_00931 0.58 +0.3 989,119 + ECD_00931 0.58 +0.4 989,212 + ECD_00931 0.73 +0.2 989,270 + ECD_00931 0.82 +0.1 989,299 + ECD_00931 0.86 -0.4 989,351 + -0.2 989,840 - ECD_00932 0.19 -0.1 991,070 - -3.1 991,079 - -0.8 991,079 - -1.5 991,184 - ECD_00933 0.18 -2.4 991,331 - ECD_00933 0.32 -2.6 991,436 - ECD_00933 0.42 -3.5 991,476 - ECD_00933 0.45 -0.6 991,587 - ECD_00933 0.55 -3.2 991,592 - ECD_00933 0.56 -2.4 991,592 - ECD_00933 0.56 -2.3 991,596 - ECD_00933 0.56 -2.8 991,596 - ECD_00933 0.56 -2.8 991,637 - ECD_00933 0.60 -2.1 991,691 - ECD_00933 0.65 -1.8 991,703 - ECD_00933 0.66 -2.4 991,703 - ECD_00933 0.66 -0.2 991,739 - ECD_00933 0.69 -3.4 991,743 - ECD_00933 0.70 -1.8 991,743 - ECD_00933 0.70 -0.8
Or see this region's nucleotide sequence