Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00911 and ECD_00912 are separated by 70 nucleotides ECD_00912 and ECD_00913 are separated by 168 nucleotides
ECD_00911: ECD_00911 - 3-phosphoserine/phosphohydroxythreonine aminotransferase, at 962,743 to 963,831
_00911
ECD_00912: ECD_00912 - 5-enolpyruvylshikimate-3-phosphate synthetase, at 963,902 to 965,185
_00912
ECD_00913: ECD_00913 - putative peptidase-related chaperone, at 965,354 to 966,118
_00913
Position (kb) 963
964
965
966 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 962.941 kb on + strand, within ECD_00911 at 962.948 kb on + strand, within ECD_00911 at 962.948 kb on + strand, within ECD_00911 at 963.028 kb on + strand, within ECD_00911 at 963.175 kb on + strand, within ECD_00911 at 963.177 kb on + strand, within ECD_00911 at 963.178 kb on - strand, within ECD_00911 at 963.314 kb on + strand, within ECD_00911 at 963.314 kb on + strand, within ECD_00911 at 963.315 kb on - strand, within ECD_00911 at 963.481 kb on + strand, within ECD_00911 at 963.482 kb on - strand, within ECD_00911 at 963.482 kb on - strand, within ECD_00911 at 963.569 kb on + strand, within ECD_00911 at 963.569 kb on + strand, within ECD_00911 at 963.569 kb on + strand, within ECD_00911 at 963.571 kb on + strand, within ECD_00911 at 963.759 kb on + strand at 963.919 kb on - strand at 963.950 kb on - strand at 964.071 kb on + strand, within ECD_00912 at 964.091 kb on + strand, within ECD_00912 at 964.093 kb on + strand, within ECD_00912 at 964.261 kb on + strand, within ECD_00912 at 964.459 kb on + strand, within ECD_00912 at 964.460 kb on - strand, within ECD_00912 at 964.471 kb on + strand, within ECD_00912 at 964.610 kb on + strand, within ECD_00912 at 964.611 kb on - strand, within ECD_00912 at 964.781 kb on - strand, within ECD_00912 at 964.904 kb on + strand, within ECD_00912 at 965.045 kb on + strand, within ECD_00912 at 965.045 kb on + strand, within ECD_00912 at 965.095 kb on + strand at 965.147 kb on + strand at 965.570 kb on + strand, within ECD_00913 at 965.614 kb on + strand, within ECD_00913 at 965.615 kb on - strand, within ECD_00913 at 965.637 kb on - strand, within ECD_00913 at 965.645 kb on + strand, within ECD_00913 at 965.645 kb on + strand, within ECD_00913 at 965.645 kb on + strand, within ECD_00913 at 965.646 kb on - strand, within ECD_00913 at 965.647 kb on + strand, within ECD_00913 at 965.648 kb on - strand, within ECD_00913 at 965.807 kb on + strand, within ECD_00913
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 962,941 + ECD_00911 0.18 -1.8 962,948 + ECD_00911 0.19 -2.1 962,948 + ECD_00911 0.19 -1.4 963,028 + ECD_00911 0.26 -2.2 963,175 + ECD_00911 0.40 -1.2 963,177 + ECD_00911 0.40 -1.9 963,178 - ECD_00911 0.40 -2.1 963,314 + ECD_00911 0.52 -1.5 963,314 + ECD_00911 0.52 -1.6 963,315 - ECD_00911 0.53 -0.4 963,481 + ECD_00911 0.68 -2.0 963,482 - ECD_00911 0.68 -1.4 963,482 - ECD_00911 0.68 -3.0 963,569 + ECD_00911 0.76 -2.5 963,569 + ECD_00911 0.76 -1.2 963,569 + ECD_00911 0.76 -1.6 963,571 + ECD_00911 0.76 -2.6 963,759 + -2.0 963,919 - -0.7 963,950 - -1.8 964,071 + ECD_00912 0.13 -3.4 964,091 + ECD_00912 0.15 -1.2 964,093 + ECD_00912 0.15 -1.0 964,261 + ECD_00912 0.28 -2.1 964,459 + ECD_00912 0.43 -1.5 964,460 - ECD_00912 0.43 -1.2 964,471 + ECD_00912 0.44 -1.7 964,610 + ECD_00912 0.55 -5.0 964,611 - ECD_00912 0.55 -2.8 964,781 - ECD_00912 0.68 -1.1 964,904 + ECD_00912 0.78 -1.1 965,045 + ECD_00912 0.89 -2.8 965,045 + ECD_00912 0.89 -1.2 965,095 + -1.6 965,147 + -1.7 965,570 + ECD_00913 0.28 -0.7 965,614 + ECD_00913 0.34 +0.0 965,615 - ECD_00913 0.34 +0.7 965,637 - ECD_00913 0.37 -0.3 965,645 + ECD_00913 0.38 +0.1 965,645 + ECD_00913 0.38 -0.0 965,645 + ECD_00913 0.38 +0.8 965,646 - ECD_00913 0.38 +0.4 965,647 + ECD_00913 0.38 +0.9 965,648 - ECD_00913 0.38 -0.4 965,807 + ECD_00913 0.59 +0.1
Or see this region's nucleotide sequence