Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00853 and ECD_00854 are separated by 29 nucleotides ECD_00854 and ECD_00855 are separated by 159 nucleotides ECD_00855 and ECD_00856 overlap by 17 nucleotides ECD_00856 and ECD_00857 are separated by 60 nucleotides
ECD_00853: ECD_00853 - inner membrane protein, at 894,793 to 895,170
_00853
ECD_00854: ECD_00854 - glutaredoxin 1, redox coenzyme for ribonucleotide reductase (RNR1a), at 895,200 to 895,457
_00854
ECD_00855: ECD_00855 - DUF1418 family protein, at 895,617 to 895,904
_00855
ECD_00856: ECD_00856 - nitroreductase A, NADPH-dependent, FMN-dependent, at 895,888 to 896,610
_00856
ECD_00857: ECD_00857 - ribosomal protein S6 modification protein, at 896,671 to 897,573
_00857
Position (kb) 895
896
897 Strain fitness (log2 ratio) -1
0
1 at 895.347 kb on - strand, within ECD_00854 at 895.347 kb on - strand, within ECD_00854 at 895.351 kb on - strand, within ECD_00854 at 895.354 kb on + strand, within ECD_00854 at 895.478 kb on + strand at 895.479 kb on - strand at 895.569 kb on + strand at 895.977 kb on + strand, within ECD_00856 at 895.977 kb on + strand, within ECD_00856 at 896.147 kb on + strand, within ECD_00856 at 896.269 kb on + strand, within ECD_00856 at 896.269 kb on + strand, within ECD_00856 at 896.270 kb on - strand, within ECD_00856 at 896.579 kb on - strand at 896.628 kb on - strand at 896.684 kb on + strand at 896.708 kb on - strand at 896.738 kb on + strand at 896.782 kb on + strand, within ECD_00857 at 896.792 kb on + strand, within ECD_00857 at 896.792 kb on + strand, within ECD_00857 at 896.877 kb on + strand, within ECD_00857 at 896.885 kb on - strand, within ECD_00857 at 897.207 kb on + strand, within ECD_00857 at 897.540 kb on + strand at 897.550 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 895,347 - ECD_00854 0.57 -0.2 895,347 - ECD_00854 0.57 +0.6 895,351 - ECD_00854 0.59 +0.0 895,354 + ECD_00854 0.60 +0.5 895,478 + -0.3 895,479 - -0.4 895,569 + +0.8 895,977 + ECD_00856 0.12 -0.5 895,977 + ECD_00856 0.12 -0.2 896,147 + ECD_00856 0.36 +0.3 896,269 + ECD_00856 0.53 -0.2 896,269 + ECD_00856 0.53 -1.1 896,270 - ECD_00856 0.53 +0.5 896,579 - -0.2 896,628 - -0.5 896,684 + -0.0 896,708 - -0.2 896,738 + -0.1 896,782 + ECD_00857 0.12 -0.0 896,792 + ECD_00857 0.13 -0.1 896,792 + ECD_00857 0.13 +0.4 896,877 + ECD_00857 0.23 +0.1 896,885 - ECD_00857 0.24 -0.8 897,207 + ECD_00857 0.59 +0.5 897,540 + +0.6 897,550 + -0.1
Or see this region's nucleotide sequence