Strain Fitness in Escherichia coli BL21 around ECD_00790

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00789 and ECD_00790 are separated by 145 nucleotidesECD_00790 and ECD_00791 are separated by 5 nucleotides ECD_00789: ECD_00789 - sugar phosphatase; fructose-1-P/ribose-5-P/glucose-6-P phosphatase, at 843,132 to 843,947 _00789 ECD_00790: ECD_00790 - putative pyruvate formate lyase, at 844,093 to 846,525 _00790 ECD_00791: ECD_00791 - putative pyruvate formate lyase activating enzyme, at 846,531 to 847,430 _00791 Position (kb) 844 845 846 847Strain fitness (log2 ratio) -1 0 1 2at 843.362 kb on + strand, within ECD_00789at 843.374 kb on + strand, within ECD_00789at 843.379 kb on - strand, within ECD_00789at 843.389 kb on + strand, within ECD_00789at 843.390 kb on - strand, within ECD_00789at 843.514 kb on - strand, within ECD_00789at 843.610 kb on + strand, within ECD_00789at 843.610 kb on + strand, within ECD_00789at 843.611 kb on - strand, within ECD_00789at 843.657 kb on + strand, within ECD_00789at 843.794 kb on + strand, within ECD_00789at 843.802 kb on + strand, within ECD_00789at 843.805 kb on + strand, within ECD_00789at 843.833 kb on + strand, within ECD_00789at 843.947 kb on + strandat 843.947 kb on + strandat 843.947 kb on + strandat 843.947 kb on + strandat 843.948 kb on - strandat 843.986 kb on + strandat 843.986 kb on + strandat 844.101 kb on + strandat 844.101 kb on + strandat 844.101 kb on + strandat 844.101 kb on + strandat 844.102 kb on - strandat 844.102 kb on - strandat 844.102 kb on - strandat 844.102 kb on - strandat 844.102 kb on - strandat 844.166 kb on + strandat 844.184 kb on - strandat 844.270 kb on - strandat 844.504 kb on - strand, within ECD_00790at 844.556 kb on + strand, within ECD_00790at 844.557 kb on - strand, within ECD_00790at 844.593 kb on + strand, within ECD_00790at 844.619 kb on + strand, within ECD_00790at 844.619 kb on + strand, within ECD_00790at 844.620 kb on - strand, within ECD_00790at 844.620 kb on - strand, within ECD_00790at 844.882 kb on - strand, within ECD_00790at 844.994 kb on + strand, within ECD_00790at 844.995 kb on - strand, within ECD_00790at 844.995 kb on - strand, within ECD_00790at 845.050 kb on - strand, within ECD_00790at 845.148 kb on + strand, within ECD_00790at 845.149 kb on - strand, within ECD_00790at 845.380 kb on - strand, within ECD_00790at 845.575 kb on - strand, within ECD_00790at 845.575 kb on - strand, within ECD_00790at 845.661 kb on + strand, within ECD_00790at 845.927 kb on - strand, within ECD_00790at 846.066 kb on + strand, within ECD_00790at 846.256 kb on - strand, within ECD_00790at 846.333 kb on + strandat 846.408 kb on - strandat 846.419 kb on + strandat 846.486 kb on + strandat 846.541 kb on - strandat 846.572 kb on - strandat 846.572 kb on - strandat 846.649 kb on + strand, within ECD_00791at 846.961 kb on - strand, within ECD_00791at 847.208 kb on + strand, within ECD_00791at 847.431 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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843,362 + ECD_00789 0.28 +0.4
843,374 + ECD_00789 0.30 +0.7
843,379 - ECD_00789 0.30 -0.6
843,389 + ECD_00789 0.31 -0.8
843,390 - ECD_00789 0.32 -0.8
843,514 - ECD_00789 0.47 -0.8
843,610 + ECD_00789 0.59 +0.6
843,610 + ECD_00789 0.59 -0.6
843,611 - ECD_00789 0.59 +0.0
843,657 + ECD_00789 0.64 -0.4
843,794 + ECD_00789 0.81 -0.1
843,802 + ECD_00789 0.82 -0.4
843,805 + ECD_00789 0.82 +0.0
843,833 + ECD_00789 0.86 -0.2
843,947 + +0.1
843,947 + -0.1
843,947 + +0.1
843,947 + +0.4
843,948 - -0.4
843,986 + +0.9
843,986 + -0.1
844,101 + +0.3
844,101 + -0.4
844,101 + +1.8
844,101 + -0.4
844,102 - -0.1
844,102 - +0.9
844,102 - +0.3
844,102 - -0.5
844,102 - +0.2
844,166 + -0.7
844,184 - +0.6
844,270 - +0.6
844,504 - ECD_00790 0.17 +0.3
844,556 + ECD_00790 0.19 +1.4
844,557 - ECD_00790 0.19 +0.3
844,593 + ECD_00790 0.21 -0.0
844,619 + ECD_00790 0.22 +0.4
844,619 + ECD_00790 0.22 +0.2
844,620 - ECD_00790 0.22 -0.1
844,620 - ECD_00790 0.22 +1.5
844,882 - ECD_00790 0.32 +0.1
844,994 + ECD_00790 0.37 -1.0
844,995 - ECD_00790 0.37 -0.1
844,995 - ECD_00790 0.37 -0.1
845,050 - ECD_00790 0.39 -0.4
845,148 + ECD_00790 0.43 +0.6
845,149 - ECD_00790 0.43 -0.2
845,380 - ECD_00790 0.53 -0.4
845,575 - ECD_00790 0.61 -0.2
845,575 - ECD_00790 0.61 -0.0
845,661 + ECD_00790 0.64 +0.0
845,927 - ECD_00790 0.75 +0.4
846,066 + ECD_00790 0.81 -0.9
846,256 - ECD_00790 0.89 +0.9
846,333 + -0.8
846,408 - -0.6
846,419 + +0.2
846,486 + +0.1
846,541 - +0.1
846,572 - +0.1
846,572 - -0.1
846,649 + ECD_00791 0.13 -0.8
846,961 - ECD_00791 0.48 +0.6
847,208 + ECD_00791 0.75 -0.9
847,431 - -0.9

Or see this region's nucleotide sequence