Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00785 and ECD_00786 are separated by 58 nucleotides ECD_00786 and ECD_00787 are separated by 218 nucleotides
ECD_00785: ECD_00785 - putative transporter, at 837,639 to 838,757
_00785
ECD_00786: ECD_00786 - L,D-transpeptidase linking Lpp to murein, at 838,816 to 839,736
_00786
ECD_00787: ECD_00787 - ABC-F family putative regulatory ATPase, at 839,955 to 841,547
_00787
Position (kb) 838
839
840 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 837.891 kb on - strand, within ECD_00785 at 837.947 kb on + strand, within ECD_00785 at 837.966 kb on - strand, within ECD_00785 at 838.073 kb on + strand, within ECD_00785 at 838.266 kb on + strand, within ECD_00785 at 838.266 kb on + strand, within ECD_00785 at 838.267 kb on - strand, within ECD_00785 at 838.268 kb on + strand, within ECD_00785 at 838.471 kb on + strand, within ECD_00785 at 838.594 kb on + strand, within ECD_00785 at 838.594 kb on + strand, within ECD_00785 at 838.740 kb on - strand at 838.804 kb on - strand at 838.992 kb on - strand, within ECD_00786 at 838.992 kb on - strand, within ECD_00786 at 839.120 kb on - strand, within ECD_00786 at 839.165 kb on + strand, within ECD_00786 at 839.181 kb on - strand, within ECD_00786 at 839.189 kb on + strand, within ECD_00786 at 839.190 kb on - strand, within ECD_00786 at 839.190 kb on - strand, within ECD_00786 at 839.332 kb on - strand, within ECD_00786 at 839.337 kb on + strand, within ECD_00786 at 839.337 kb on + strand, within ECD_00786 at 839.403 kb on - strand, within ECD_00786 at 839.403 kb on - strand, within ECD_00786 at 839.406 kb on - strand, within ECD_00786 at 839.491 kb on - strand, within ECD_00786 at 839.574 kb on - strand, within ECD_00786 at 839.593 kb on - strand, within ECD_00786 at 839.658 kb on - strand at 839.663 kb on - strand at 839.779 kb on + strand at 839.802 kb on - strand at 839.803 kb on + strand at 839.804 kb on - strand at 839.909 kb on + strand at 840.072 kb on - strand at 840.083 kb on + strand at 840.155 kb on + strand, within ECD_00787 at 840.296 kb on + strand, within ECD_00787 at 840.296 kb on + strand, within ECD_00787 at 840.317 kb on + strand, within ECD_00787 at 840.317 kb on + strand, within ECD_00787 at 840.611 kb on + strand, within ECD_00787 at 840.663 kb on + strand, within ECD_00787 at 840.664 kb on - strand, within ECD_00787 at 840.672 kb on + strand, within ECD_00787 at 840.672 kb on + strand, within ECD_00787 at 840.672 kb on + strand, within ECD_00787 at 840.673 kb on - strand, within ECD_00787
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 837,891 - ECD_00785 0.23 +0.7 837,947 + ECD_00785 0.28 +0.2 837,966 - ECD_00785 0.29 -0.0 838,073 + ECD_00785 0.39 +0.1 838,266 + ECD_00785 0.56 +0.5 838,266 + ECD_00785 0.56 +0.2 838,267 - ECD_00785 0.56 +0.2 838,268 + ECD_00785 0.56 +0.6 838,471 + ECD_00785 0.74 -0.2 838,594 + ECD_00785 0.85 -0.0 838,594 + ECD_00785 0.85 +0.2 838,740 - +0.5 838,804 - +0.7 838,992 - ECD_00786 0.19 -2.7 838,992 - ECD_00786 0.19 -2.5 839,120 - ECD_00786 0.33 -0.6 839,165 + ECD_00786 0.38 -1.5 839,181 - ECD_00786 0.40 -2.8 839,189 + ECD_00786 0.40 -2.0 839,190 - ECD_00786 0.41 -1.5 839,190 - ECD_00786 0.41 -1.8 839,332 - ECD_00786 0.56 -3.3 839,337 + ECD_00786 0.57 -3.6 839,337 + ECD_00786 0.57 -2.1 839,403 - ECD_00786 0.64 -2.5 839,403 - ECD_00786 0.64 -1.2 839,406 - ECD_00786 0.64 -1.4 839,491 - ECD_00786 0.73 -2.1 839,574 - ECD_00786 0.82 -3.0 839,593 - ECD_00786 0.84 -1.5 839,658 - -2.1 839,663 - -1.8 839,779 + -1.7 839,802 - -0.1 839,803 + -0.0 839,804 - +0.3 839,909 + +0.3 840,072 - +0.5 840,083 + +0.1 840,155 + ECD_00787 0.13 +0.6 840,296 + ECD_00787 0.21 +0.2 840,296 + ECD_00787 0.21 -0.1 840,317 + ECD_00787 0.23 -0.2 840,317 + ECD_00787 0.23 +0.3 840,611 + ECD_00787 0.41 -0.6 840,663 + ECD_00787 0.44 +2.1 840,664 - ECD_00787 0.45 +0.2 840,672 + ECD_00787 0.45 +0.2 840,672 + ECD_00787 0.45 +0.2 840,672 + ECD_00787 0.45 +0.0 840,673 - ECD_00787 0.45 +0.4
Or see this region's nucleotide sequence