Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00681 and ECD_00682 overlap by 7 nucleotides ECD_00682 and ECD_00683 overlap by 1 nucleotides ECD_00683 and ECD_00684 are separated by 15 nucleotides
ECD_00681: ECD_00681 - succinate dehydrogenase, membrane subunit, binds cytochrome b556, at 713,747 to 714,136
_00681
ECD_00682: ECD_00682 - succinate dehydrogenase, membrane subunit, binds cytochrome b556, at 714,130 to 714,477
_00682
ECD_00683: ECD_00683 - succinate dehydrogenase, flavoprotein subunit, at 714,477 to 716,243
_00683
ECD_00684: ECD_00684 - succinate dehydrogenase, FeS subunit, at 716,259 to 716,975
_00684
Position (kb) 714
715
716
717 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 713.722 kb on + strand at 714.094 kb on + strand, within ECD_00681 at 714.094 kb on + strand, within ECD_00681 at 714.223 kb on + strand, within ECD_00682 at 714.223 kb on + strand, within ECD_00682 at 714.262 kb on + strand, within ECD_00682 at 714.263 kb on - strand, within ECD_00682 at 714.330 kb on + strand, within ECD_00682 at 714.684 kb on + strand, within ECD_00683 at 714.685 kb on - strand, within ECD_00683 at 714.708 kb on + strand, within ECD_00683 at 714.736 kb on - strand, within ECD_00683 at 714.743 kb on + strand, within ECD_00683 at 714.815 kb on + strand, within ECD_00683 at 714.819 kb on + strand, within ECD_00683 at 715.097 kb on + strand, within ECD_00683 at 715.657 kb on + strand, within ECD_00683 at 715.883 kb on + strand, within ECD_00683 at 715.883 kb on + strand, within ECD_00683 at 716.235 kb on - strand at 716.483 kb on + strand, within ECD_00684 at 716.616 kb on + strand, within ECD_00684 at 716.616 kb on + strand, within ECD_00684 at 716.705 kb on + strand, within ECD_00684 at 716.705 kb on + strand, within ECD_00684 at 716.902 kb on + strand, within ECD_00684 at 716.902 kb on + strand, within ECD_00684 at 717.141 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 713,722 + -0.9 714,094 + ECD_00681 0.89 -1.4 714,094 + ECD_00681 0.89 -1.1 714,223 + ECD_00682 0.27 -1.0 714,223 + ECD_00682 0.27 -0.8 714,262 + ECD_00682 0.38 -1.1 714,263 - ECD_00682 0.38 +0.4 714,330 + ECD_00682 0.57 -0.7 714,684 + ECD_00683 0.12 +0.2 714,685 - ECD_00683 0.12 -0.3 714,708 + ECD_00683 0.13 -2.1 714,736 - ECD_00683 0.15 -2.4 714,743 + ECD_00683 0.15 -1.6 714,815 + ECD_00683 0.19 +0.5 714,819 + ECD_00683 0.19 -3.1 715,097 + ECD_00683 0.35 -0.4 715,657 + ECD_00683 0.67 -1.6 715,883 + ECD_00683 0.80 -1.6 715,883 + ECD_00683 0.80 -0.9 716,235 - -0.9 716,483 + ECD_00684 0.31 -1.6 716,616 + ECD_00684 0.50 -0.4 716,616 + ECD_00684 0.50 -0.9 716,705 + ECD_00684 0.62 -1.5 716,705 + ECD_00684 0.62 -1.8 716,902 + ECD_00684 0.90 -0.3 716,902 + ECD_00684 0.90 +0.2 717,141 + -0.3
Or see this region's nucleotide sequence