Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00680 and ECD_00681 are separated by 708 nucleotides ECD_00681 and ECD_00682 overlap by 7 nucleotides ECD_00682 and ECD_00683 overlap by 1 nucleotides
ECD_00680: ECD_00680 - citrate synthase, at 711,755 to 713,038
_00680
ECD_00681: ECD_00681 - succinate dehydrogenase, membrane subunit, binds cytochrome b556, at 713,747 to 714,136
_00681
ECD_00682: ECD_00682 - succinate dehydrogenase, membrane subunit, binds cytochrome b556, at 714,130 to 714,477
_00682
ECD_00683: ECD_00683 - succinate dehydrogenase, flavoprotein subunit, at 714,477 to 716,243
_00683
Position (kb) 713
714
715 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 712.776 kb on + strand, within ECD_00680 at 712.777 kb on - strand, within ECD_00680 at 712.792 kb on - strand, within ECD_00680 at 712.792 kb on - strand, within ECD_00680 at 712.843 kb on + strand, within ECD_00680 at 712.951 kb on + strand at 713.060 kb on - strand at 713.243 kb on - strand at 713.308 kb on - strand at 713.476 kb on + strand at 713.722 kb on + strand at 714.094 kb on + strand, within ECD_00681 at 714.094 kb on + strand, within ECD_00681 at 714.223 kb on + strand, within ECD_00682 at 714.223 kb on + strand, within ECD_00682 at 714.262 kb on + strand, within ECD_00682 at 714.263 kb on - strand, within ECD_00682 at 714.330 kb on + strand, within ECD_00682 at 714.684 kb on + strand, within ECD_00683 at 714.685 kb on - strand, within ECD_00683 at 714.708 kb on + strand, within ECD_00683 at 714.736 kb on - strand, within ECD_00683 at 714.743 kb on + strand, within ECD_00683 at 714.815 kb on + strand, within ECD_00683 at 714.819 kb on + strand, within ECD_00683 at 715.097 kb on + strand, within ECD_00683
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 712,776 + ECD_00680 0.80 -2.9 712,777 - ECD_00680 0.80 -2.2 712,792 - ECD_00680 0.81 -2.2 712,792 - ECD_00680 0.81 -1.9 712,843 + ECD_00680 0.85 -3.8 712,951 + -1.9 713,060 - -1.8 713,243 - +0.9 713,308 - +0.5 713,476 + -0.7 713,722 + -0.9 714,094 + ECD_00681 0.89 -1.4 714,094 + ECD_00681 0.89 -1.1 714,223 + ECD_00682 0.27 -1.0 714,223 + ECD_00682 0.27 -0.8 714,262 + ECD_00682 0.38 -1.1 714,263 - ECD_00682 0.38 +0.4 714,330 + ECD_00682 0.57 -0.7 714,684 + ECD_00683 0.12 +0.2 714,685 - ECD_00683 0.12 -0.3 714,708 + ECD_00683 0.13 -2.1 714,736 - ECD_00683 0.15 -2.4 714,743 + ECD_00683 0.15 -1.6 714,815 + ECD_00683 0.19 +0.5 714,819 + ECD_00683 0.19 -3.1 715,097 + ECD_00683 0.35 -0.4
Or see this region's nucleotide sequence