Strain Fitness in Escherichia coli BL21 around ECD_00646

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00645 and ECD_00646 are separated by 213 nucleotidesECD_00646 and ECD_00647 are separated by 40 nucleotides ECD_00645: ECD_00645 - phosphoglucomutase, at 673,432 to 675,072 _00645 ECD_00646: ECD_00646 - lipoprotein, at 675,286 to 675,780 _00646 ECD_00647: ECD_00647 - hypothetical protein, at 675,821 to 676,471 _00647 Position (kb) 675 676Strain fitness (log2 ratio) -1 0 1at 675.338 kb on + strand, within ECD_00646at 675.338 kb on + strand, within ECD_00646at 675.444 kb on + strand, within ECD_00646at 675.445 kb on - strand, within ECD_00646at 675.489 kb on - strand, within ECD_00646at 675.541 kb on - strand, within ECD_00646at 675.555 kb on + strand, within ECD_00646at 675.581 kb on + strand, within ECD_00646at 675.668 kb on - strand, within ECD_00646at 675.668 kb on - strand, within ECD_00646at 676.764 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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675,338 + ECD_00646 0.11 -0.1
675,338 + ECD_00646 0.11 +0.2
675,444 + ECD_00646 0.32 -0.5
675,445 - ECD_00646 0.32 -1.4
675,489 - ECD_00646 0.41 +0.2
675,541 - ECD_00646 0.52 -0.6
675,555 + ECD_00646 0.54 -0.6
675,581 + ECD_00646 0.60 -0.1
675,668 - ECD_00646 0.77 -0.2
675,668 - ECD_00646 0.77 -0.5
676,764 - -0.1

Or see this region's nucleotide sequence