Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00633 and ECD_00634 are separated by 8 nucleotides ECD_00634 and ECD_00635 are separated by 59 nucleotides
ECD_00633: ECD_00633 - N-acetylglucosamine-inducible nag divergent operon transcriptional repressor, at 660,248 to 661,468
_00633
ECD_00634: ECD_00634 - N-acetylglucosamine-6-phosphate deacetylase, at 661,477 to 662,625
_00634
ECD_00635: ECD_00635 - glucosamine-6-phosphate deaminase, at 662,685 to 663,485
_00635
Position (kb) 661
662
663 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 660.519 kb on + strand, within ECD_00633 at 660.519 kb on + strand, within ECD_00633 at 660.519 kb on + strand, within ECD_00633 at 660.911 kb on - strand, within ECD_00633 at 660.933 kb on - strand, within ECD_00633 at 661.050 kb on + strand, within ECD_00633 at 661.055 kb on - strand, within ECD_00633 at 661.150 kb on + strand, within ECD_00633 at 661.313 kb on - strand, within ECD_00633 at 661.415 kb on - strand at 661.415 kb on - strand at 661.443 kb on - strand at 661.469 kb on - strand at 661.469 kb on - strand at 661.469 kb on - strand at 661.561 kb on - strand at 661.672 kb on - strand, within ECD_00634 at 661.749 kb on - strand, within ECD_00634 at 661.749 kb on - strand, within ECD_00634 at 661.751 kb on - strand, within ECD_00634 at 661.891 kb on - strand, within ECD_00634 at 661.902 kb on - strand, within ECD_00634 at 661.974 kb on - strand, within ECD_00634 at 662.329 kb on - strand, within ECD_00634 at 662.347 kb on - strand, within ECD_00634 at 662.396 kb on - strand, within ECD_00634 at 662.827 kb on - strand, within ECD_00635 at 662.912 kb on + strand, within ECD_00635 at 662.913 kb on - strand, within ECD_00635 at 662.913 kb on - strand, within ECD_00635 at 663.104 kb on - strand, within ECD_00635 at 663.265 kb on + strand, within ECD_00635 at 663.340 kb on + strand, within ECD_00635 at 663.509 kb on + strand at 663.509 kb on + strand at 663.542 kb on - strand at 663.618 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 660,519 + ECD_00633 0.22 +0.2 660,519 + ECD_00633 0.22 +0.4 660,519 + ECD_00633 0.22 -0.8 660,911 - ECD_00633 0.54 -1.0 660,933 - ECD_00633 0.56 -1.7 661,050 + ECD_00633 0.66 -0.9 661,055 - ECD_00633 0.66 -0.1 661,150 + ECD_00633 0.74 -1.3 661,313 - ECD_00633 0.87 -1.0 661,415 - -1.6 661,415 - -0.5 661,443 - -0.4 661,469 - -0.8 661,469 - -0.6 661,469 - -0.8 661,561 - -2.6 661,672 - ECD_00634 0.17 -1.5 661,749 - ECD_00634 0.24 -1.3 661,749 - ECD_00634 0.24 -2.2 661,751 - ECD_00634 0.24 -0.0 661,891 - ECD_00634 0.36 -1.0 661,902 - ECD_00634 0.37 -2.8 661,974 - ECD_00634 0.43 -0.9 662,329 - ECD_00634 0.74 -1.8 662,347 - ECD_00634 0.76 -2.6 662,396 - ECD_00634 0.80 -3.6 662,827 - ECD_00635 0.18 -0.3 662,912 + ECD_00635 0.28 -1.3 662,913 - ECD_00635 0.28 -0.7 662,913 - ECD_00635 0.28 +0.0 663,104 - ECD_00635 0.52 +0.1 663,265 + ECD_00635 0.72 -0.6 663,340 + ECD_00635 0.82 -0.4 663,509 + -0.2 663,509 + -2.8 663,542 - +0.8 663,618 + -0.6
Or see this region's nucleotide sequence