Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00632 and ECD_00633 are separated by 47 nucleotides ECD_00633 and ECD_00634 are separated by 8 nucleotides
ECD_00632: ECD_00632 - UMP phosphatase, at 659,448 to 660,200
_00632
ECD_00633: ECD_00633 - N-acetylglucosamine-inducible nag divergent operon transcriptional repressor, at 660,248 to 661,468
_00633
ECD_00634: ECD_00634 - N-acetylglucosamine-6-phosphate deacetylase, at 661,477 to 662,625
_00634
Position (kb) 660
661
662 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 659.354 kb on - strand at 659.446 kb on - strand at 659.446 kb on - strand at 659.454 kb on - strand at 659.480 kb on - strand at 659.683 kb on + strand, within ECD_00632 at 659.684 kb on - strand, within ECD_00632 at 659.684 kb on - strand, within ECD_00632 at 659.684 kb on - strand, within ECD_00632 at 659.806 kb on + strand, within ECD_00632 at 659.807 kb on - strand, within ECD_00632 at 659.807 kb on - strand, within ECD_00632 at 659.817 kb on - strand, within ECD_00632 at 659.836 kb on + strand, within ECD_00632 at 659.837 kb on - strand, within ECD_00632 at 659.885 kb on + strand, within ECD_00632 at 659.938 kb on + strand, within ECD_00632 at 659.994 kb on - strand, within ECD_00632 at 659.994 kb on - strand, within ECD_00632 at 659.996 kb on - strand, within ECD_00632 at 660.013 kb on - strand, within ECD_00632 at 660.071 kb on - strand, within ECD_00632 at 660.149 kb on + strand at 660.227 kb on - strand at 660.348 kb on - strand at 660.362 kb on - strand at 660.519 kb on + strand, within ECD_00633 at 660.519 kb on + strand, within ECD_00633 at 660.519 kb on + strand, within ECD_00633 at 660.911 kb on - strand, within ECD_00633 at 660.933 kb on - strand, within ECD_00633 at 661.050 kb on + strand, within ECD_00633 at 661.055 kb on - strand, within ECD_00633 at 661.150 kb on + strand, within ECD_00633 at 661.313 kb on - strand, within ECD_00633 at 661.415 kb on - strand at 661.415 kb on - strand at 661.443 kb on - strand at 661.469 kb on - strand at 661.469 kb on - strand at 661.469 kb on - strand at 661.561 kb on - strand at 661.672 kb on - strand, within ECD_00634 at 661.749 kb on - strand, within ECD_00634 at 661.749 kb on - strand, within ECD_00634 at 661.751 kb on - strand, within ECD_00634 at 661.891 kb on - strand, within ECD_00634 at 661.902 kb on - strand, within ECD_00634 at 661.974 kb on - strand, within ECD_00634 at 662.329 kb on - strand, within ECD_00634 at 662.347 kb on - strand, within ECD_00634 at 662.396 kb on - strand, within ECD_00634
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 659,354 - +1.4 659,446 - +0.5 659,446 - -0.2 659,454 - -0.3 659,480 - +0.0 659,683 + ECD_00632 0.31 -0.1 659,684 - ECD_00632 0.31 -0.1 659,684 - ECD_00632 0.31 -0.2 659,684 - ECD_00632 0.31 -0.3 659,806 + ECD_00632 0.48 +0.2 659,807 - ECD_00632 0.48 +0.1 659,807 - ECD_00632 0.48 -0.5 659,817 - ECD_00632 0.49 -0.2 659,836 + ECD_00632 0.52 +0.2 659,837 - ECD_00632 0.52 -1.8 659,885 + ECD_00632 0.58 +0.4 659,938 + ECD_00632 0.65 +0.3 659,994 - ECD_00632 0.73 -0.5 659,994 - ECD_00632 0.73 -0.4 659,996 - ECD_00632 0.73 +0.7 660,013 - ECD_00632 0.75 +0.1 660,071 - ECD_00632 0.83 +0.4 660,149 + +0.2 660,227 - +0.1 660,348 - -0.9 660,362 - -1.6 660,519 + ECD_00633 0.22 +0.2 660,519 + ECD_00633 0.22 +0.4 660,519 + ECD_00633 0.22 -0.8 660,911 - ECD_00633 0.54 -1.0 660,933 - ECD_00633 0.56 -1.7 661,050 + ECD_00633 0.66 -0.9 661,055 - ECD_00633 0.66 -0.1 661,150 + ECD_00633 0.74 -1.3 661,313 - ECD_00633 0.87 -1.0 661,415 - -1.6 661,415 - -0.5 661,443 - -0.4 661,469 - -0.8 661,469 - -0.6 661,469 - -0.8 661,561 - -2.6 661,672 - ECD_00634 0.17 -1.5 661,749 - ECD_00634 0.24 -1.3 661,749 - ECD_00634 0.24 -2.2 661,751 - ECD_00634 0.24 -0.0 661,891 - ECD_00634 0.36 -1.0 661,902 - ECD_00634 0.37 -2.8 661,974 - ECD_00634 0.43 -0.9 662,329 - ECD_00634 0.74 -1.8 662,347 - ECD_00634 0.76 -2.6 662,396 - ECD_00634 0.80 -3.6
Or see this region's nucleotide sequence