Strain Fitness in Escherichia coli BL21 around ECD_00552

Experiment: Mixed culture, Halobacteriovorax-10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00551 and ECD_00552 are separated by 2 nucleotidesECD_00552 and ECD_00553 overlap by 4 nucleotides ECD_00551: ECD_00551 - enterobactin/ferrienterobactin esterase, at 573,224 to 574,426 _00551 ECD_00552: ECD_00552 - stimulator of EntF adenylation activity, MbtH-like, at 574,429 to 574,647 _00552 ECD_00553: ECD_00553 - enterobactin synthase multienzyme complex component, ATP-dependent, at 574,644 to 578,525 _00553 Position (kb) 574 575Strain fitness (log2 ratio) -1 0 1at 573.503 kb on - strand, within ECD_00551at 573.503 kb on - strand, within ECD_00551at 573.580 kb on - strand, within ECD_00551at 573.613 kb on - strand, within ECD_00551at 573.909 kb on - strand, within ECD_00551at 573.962 kb on - strand, within ECD_00551at 574.028 kb on - strand, within ECD_00551at 574.125 kb on + strand, within ECD_00551at 574.299 kb on + strand, within ECD_00551at 574.475 kb on + strand, within ECD_00552at 574.475 kb on + strand, within ECD_00552at 574.657 kb on + strandat 574.738 kb on - strandat 574.812 kb on - strandat 575.173 kb on + strand, within ECD_00553at 575.312 kb on + strand, within ECD_00553at 575.336 kb on + strand, within ECD_00553at 575.448 kb on + strand, within ECD_00553at 575.449 kb on - strand, within ECD_00553

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
remove
573,503 - ECD_00551 0.23 -0.3
573,503 - ECD_00551 0.23 -0.3
573,580 - ECD_00551 0.30 +0.5
573,613 - ECD_00551 0.32 -0.7
573,909 - ECD_00551 0.57 -0.5
573,962 - ECD_00551 0.61 +0.2
574,028 - ECD_00551 0.67 -0.3
574,125 + ECD_00551 0.75 -1.0
574,299 + ECD_00551 0.89 -0.1
574,475 + ECD_00552 0.21 -0.1
574,475 + ECD_00552 0.21 +0.6
574,657 + -0.7
574,738 - -0.4
574,812 - +0.8
575,173 + ECD_00553 0.14 -0.4
575,312 + ECD_00553 0.17 +0.9
575,336 + ECD_00553 0.18 +0.0
575,448 + ECD_00553 0.21 -0.0
575,449 - ECD_00553 0.21 -0.7

Or see this region's nucleotide sequence