Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00498 and ECD_00499 overlap by 8 nucleotides ECD_00499 and ECD_00500 overlap by 4 nucleotides ECD_00500 and ECD_00501 overlap by 4 nucleotides ECD_00501 and ECD_00502 are separated by 85 nucleotides ECD_00502 and ECD_00504 are separated by 717 nucleotides
ECD_00498: ECD_00498 - DLP12 prophage; conserved protein, at 541,516 to 541,686
_00498
ECD_00499: ECD_00499 - DLP12 prophage; uncharacterized protein, at 541,679 to 541,969
_00499
ECD_00500: ECD_00500 - DLP12 prophage; endonuclease RUS, at 541,966 to 542,328
_00500
ECD_00501: ECD_00501 - uncharacterized protein, DLP12 prophage, at 542,325 to 542,465
_00501
ECD_00502: ECD_00502 - DLP12 prophage; putative antitermination protein, at 542,551 to 542,934
_00502
ECD_00504: ECD_00504 - IS1 protein InsB, at 543,652 to 544,155
_00504
Position (kb) 542
543 Strain fitness (log2 ratio) -1
0
1 at 541.555 kb on + strand, within ECD_00498 at 541.556 kb on - strand, within ECD_00498 at 541.556 kb on - strand, within ECD_00498 at 541.562 kb on + strand, within ECD_00498 at 541.563 kb on - strand, within ECD_00498 at 541.575 kb on + strand, within ECD_00498 at 541.575 kb on + strand, within ECD_00498 at 541.582 kb on - strand, within ECD_00498 at 541.627 kb on - strand, within ECD_00498 at 541.742 kb on - strand, within ECD_00499 at 541.918 kb on + strand, within ECD_00499 at 541.956 kb on + strand at 541.980 kb on + strand at 542.014 kb on + strand, within ECD_00500 at 542.015 kb on - strand, within ECD_00500 at 542.122 kb on - strand, within ECD_00500 at 542.343 kb on - strand, within ECD_00501 at 542.383 kb on + strand, within ECD_00501 at 542.384 kb on - strand, within ECD_00501 at 542.384 kb on - strand, within ECD_00501 at 542.486 kb on + strand at 542.545 kb on - strand at 542.774 kb on - strand, within ECD_00502 at 543.126 kb on - strand at 543.206 kb on - strand at 543.258 kb on + strand at 543.275 kb on + strand at 543.283 kb on + strand at 543.449 kb on + strand at 543.469 kb on - strand at 543.503 kb on - strand at 543.546 kb on - strand at 543.608 kb on + strand at 543.615 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 541,555 + ECD_00498 0.23 +0.0 541,556 - ECD_00498 0.23 +0.3 541,556 - ECD_00498 0.23 +0.4 541,562 + ECD_00498 0.27 -0.2 541,563 - ECD_00498 0.27 +1.2 541,575 + ECD_00498 0.35 +0.2 541,575 + ECD_00498 0.35 +0.9 541,582 - ECD_00498 0.39 +0.1 541,627 - ECD_00498 0.65 +0.4 541,742 - ECD_00499 0.22 +0.8 541,918 + ECD_00499 0.82 +1.1 541,956 + +0.0 541,980 + -0.1 542,014 + ECD_00500 0.13 -0.6 542,015 - ECD_00500 0.13 -0.3 542,122 - ECD_00500 0.43 +0.5 542,343 - ECD_00501 0.13 -0.9 542,383 + ECD_00501 0.41 +0.4 542,384 - ECD_00501 0.42 -0.4 542,384 - ECD_00501 0.42 +0.7 542,486 + -0.1 542,545 - +0.0 542,774 - ECD_00502 0.58 -0.9 543,126 - +0.9 543,206 - +0.4 543,258 + +1.1 543,275 + -0.4 543,283 + -0.2 543,449 + +0.2 543,469 - -0.8 543,503 - +0.3 543,546 - +0.3 543,608 + +1.0 543,615 - +0.4
Or see this region's nucleotide sequence