Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00472 and ECD_00473 overlap by 4 nucleotides ECD_00473 and ECD_00474 are separated by 117 nucleotides ECD_00474 and ECD_00475 are separated by 2 nucleotides
ECD_00472: ECD_00472 - N5-carboxyaminoimidazole ribonucleotide synthase, at 520,614 to 521,681
_00472
ECD_00473: ECD_00473 - N5-carboxyaminoimidazole ribonucleotide mutase, at 521,678 to 522,187
_00473
ECD_00474: ECD_00474 - UDP-2,3-diacylglucosamine pyrophosphohydrolase, at 522,305 to 523,027
_00474
ECD_00475: ECD_00475 - peptidyl-prolyl cis-trans isomerase B (rotamase B), at 523,030 to 523,524
_00475
Position (kb) 521
522
523 Strain fitness (log2 ratio) -2
-1
0
1 at 520.743 kb on - strand, within ECD_00472 at 520.807 kb on + strand, within ECD_00472 at 520.821 kb on - strand, within ECD_00472 at 520.851 kb on - strand, within ECD_00472 at 520.949 kb on + strand, within ECD_00472 at 521.120 kb on + strand, within ECD_00472 at 521.121 kb on - strand, within ECD_00472 at 521.213 kb on + strand, within ECD_00472 at 521.214 kb on - strand, within ECD_00472 at 521.214 kb on - strand, within ECD_00472 at 521.232 kb on - strand, within ECD_00472 at 521.232 kb on - strand, within ECD_00472 at 521.385 kb on + strand, within ECD_00472 at 521.385 kb on + strand, within ECD_00472 at 521.454 kb on - strand, within ECD_00472 at 521.640 kb on - strand at 521.865 kb on - strand, within ECD_00473 at 521.874 kb on + strand, within ECD_00473 at 521.875 kb on - strand, within ECD_00473 at 521.990 kb on - strand, within ECD_00473 at 522.041 kb on - strand, within ECD_00473
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 520,743 - ECD_00472 0.12 -1.5 520,807 + ECD_00472 0.18 -0.8 520,821 - ECD_00472 0.19 -1.1 520,851 - ECD_00472 0.22 -0.1 520,949 + ECD_00472 0.31 -0.2 521,120 + ECD_00472 0.47 -0.3 521,121 - ECD_00472 0.47 -1.0 521,213 + ECD_00472 0.56 -1.3 521,214 - ECD_00472 0.56 -2.2 521,214 - ECD_00472 0.56 -0.2 521,232 - ECD_00472 0.58 +0.2 521,232 - ECD_00472 0.58 -0.4 521,385 + ECD_00472 0.72 +0.1 521,385 + ECD_00472 0.72 -0.6 521,454 - ECD_00472 0.79 -1.6 521,640 - +0.1 521,865 - ECD_00473 0.37 -1.4 521,874 + ECD_00473 0.38 -1.9 521,875 - ECD_00473 0.39 -1.8 521,990 - ECD_00473 0.61 -1.7 522,041 - ECD_00473 0.71 -1.3
Or see this region's nucleotide sequence