Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00454 and ECD_00455 are separated by 229 nucleotides ECD_00455 and ECD_00456 are separated by 77 nucleotides ECD_00456 and ECD_00457 are separated by 89 nucleotides
ECD_00454: ECD_00454 - allD operon transcriptional activator, at 500,440 to 501,366
_00454
ECD_00455: ECD_00455 - ureidoglycolate lyase, releasing urea, at 501,596 to 502,078
_00455
ECD_00456: ECD_00456 - glyoxylate-inducible transcriptional repressor of all and gcl operons, at 502,156 to 502,971
_00456
ECD_00457: ECD_00457 - glyoxylate carboligase, at 503,061 to 504,842
_00457
Position (kb) 502
503 Strain fitness (log2 ratio) -2
-1
0
1 at 501.173 kb on - strand, within ECD_00454 at 501.290 kb on - strand at 501.576 kb on + strand at 501.582 kb on - strand at 501.582 kb on - strand at 501.609 kb on + strand at 501.634 kb on + strand at 501.947 kb on + strand, within ECD_00455 at 501.955 kb on + strand, within ECD_00455 at 502.049 kb on - strand at 502.099 kb on - strand at 502.108 kb on + strand at 502.109 kb on - strand at 502.123 kb on + strand at 502.151 kb on + strand at 502.151 kb on + strand at 502.152 kb on - strand at 502.155 kb on + strand at 502.252 kb on + strand, within ECD_00456 at 502.395 kb on + strand, within ECD_00456 at 502.395 kb on + strand, within ECD_00456 at 502.397 kb on + strand, within ECD_00456 at 502.397 kb on + strand, within ECD_00456 at 502.397 kb on + strand, within ECD_00456 at 502.397 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.403 kb on + strand, within ECD_00456 at 502.429 kb on + strand, within ECD_00456 at 502.429 kb on + strand, within ECD_00456 at 502.430 kb on - strand, within ECD_00456 at 502.487 kb on + strand, within ECD_00456 at 502.538 kb on + strand, within ECD_00456 at 502.541 kb on + strand, within ECD_00456 at 502.541 kb on + strand, within ECD_00456 at 502.553 kb on + strand, within ECD_00456 at 502.560 kb on + strand, within ECD_00456 at 502.560 kb on + strand, within ECD_00456 at 502.707 kb on + strand, within ECD_00456 at 502.707 kb on + strand, within ECD_00456 at 502.708 kb on - strand, within ECD_00456 at 502.719 kb on + strand, within ECD_00456 at 502.765 kb on + strand, within ECD_00456 at 502.776 kb on + strand, within ECD_00456 at 502.822 kb on + strand, within ECD_00456 at 502.822 kb on + strand, within ECD_00456 at 502.970 kb on - strand at 503.094 kb on + strand at 503.094 kb on + strand at 503.094 kb on + strand at 503.094 kb on + strand at 503.114 kb on + strand at 503.161 kb on - strand at 503.242 kb on - strand, within ECD_00457 at 503.243 kb on + strand, within ECD_00457 at 503.273 kb on - strand, within ECD_00457 at 503.273 kb on - strand, within ECD_00457 at 503.410 kb on + strand, within ECD_00457 at 503.410 kb on + strand, within ECD_00457 at 503.592 kb on + strand, within ECD_00457 at 503.593 kb on - strand, within ECD_00457 at 503.593 kb on - strand, within ECD_00457 at 503.593 kb on - strand, within ECD_00457 at 503.659 kb on + strand, within ECD_00457 at 503.701 kb on + strand, within ECD_00457 at 503.705 kb on + strand, within ECD_00457 at 503.960 kb on + strand, within ECD_00457 at 503.960 kb on + strand, within ECD_00457 at 503.961 kb on - strand, within ECD_00457
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 501,173 - ECD_00454 0.79 +0.3 501,290 - +0.3 501,576 + -0.3 501,582 - +0.8 501,582 - +0.9 501,609 + +1.0 501,634 + -0.1 501,947 + ECD_00455 0.73 -0.5 501,955 + ECD_00455 0.74 +0.3 502,049 - +0.5 502,099 - +0.7 502,108 + -0.9 502,109 - +0.6 502,123 + -0.0 502,151 + +0.1 502,151 + -0.3 502,152 - +0.0 502,155 + -0.1 502,252 + ECD_00456 0.12 -2.6 502,395 + ECD_00456 0.29 -0.4 502,395 + ECD_00456 0.29 -0.3 502,397 + ECD_00456 0.30 -0.4 502,397 + ECD_00456 0.30 -0.1 502,397 + ECD_00456 0.30 -0.4 502,397 + ECD_00456 0.30 +0.0 502,403 + ECD_00456 0.30 -0.3 502,403 + ECD_00456 0.30 +0.0 502,403 + ECD_00456 0.30 -0.5 502,403 + ECD_00456 0.30 -0.1 502,403 + ECD_00456 0.30 -0.8 502,403 + ECD_00456 0.30 -0.2 502,403 + ECD_00456 0.30 -0.3 502,403 + ECD_00456 0.30 -0.3 502,429 + ECD_00456 0.33 +0.1 502,429 + ECD_00456 0.33 -0.3 502,430 - ECD_00456 0.34 -1.0 502,487 + ECD_00456 0.41 -0.7 502,538 + ECD_00456 0.47 -1.3 502,541 + ECD_00456 0.47 +0.1 502,541 + ECD_00456 0.47 -0.3 502,553 + ECD_00456 0.49 -1.9 502,560 + ECD_00456 0.50 -0.7 502,560 + ECD_00456 0.50 -0.3 502,707 + ECD_00456 0.68 -0.0 502,707 + ECD_00456 0.68 -0.8 502,708 - ECD_00456 0.68 +0.3 502,719 + ECD_00456 0.69 -0.3 502,765 + ECD_00456 0.75 -0.5 502,776 + ECD_00456 0.76 -0.4 502,822 + ECD_00456 0.82 -0.2 502,822 + ECD_00456 0.82 -0.3 502,970 - -0.0 503,094 + -0.3 503,094 + +0.5 503,094 + +1.0 503,094 + -0.0 503,114 + +0.3 503,161 - -0.2 503,242 - ECD_00457 0.10 -0.1 503,243 + ECD_00457 0.10 -0.4 503,273 - ECD_00457 0.12 -0.2 503,273 - ECD_00457 0.12 -0.5 503,410 + ECD_00457 0.20 -0.3 503,410 + ECD_00457 0.20 +0.3 503,592 + ECD_00457 0.30 +0.0 503,593 - ECD_00457 0.30 +0.3 503,593 - ECD_00457 0.30 +0.2 503,593 - ECD_00457 0.30 -0.4 503,659 + ECD_00457 0.34 +0.1 503,701 + ECD_00457 0.36 +0.2 503,705 + ECD_00457 0.36 -0.8 503,960 + ECD_00457 0.50 -1.0 503,960 + ECD_00457 0.50 +0.3 503,961 - ECD_00457 0.51 -0.3
Or see this region's nucleotide sequence