Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00387 and ECD_00388 are separated by 245 nucleotides ECD_00388 and ECD_00389 are separated by 125 nucleotides
ECD_00387: ECD_00387 - peptidyl-prolyl cis/trans isomerase (trigger factor), at 422,817 to 424,115
_00387
ECD_00388: ECD_00388 - proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases, at 424,361 to 424,984
_00388
ECD_00389: ECD_00389 - ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease, at 425,110 to 426,384
_00389
Position (kb) 424
425 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 423.395 kb on + strand, within ECD_00387 at 423.477 kb on + strand, within ECD_00387 at 423.478 kb on - strand, within ECD_00387 at 423.500 kb on + strand, within ECD_00387 at 423.500 kb on + strand, within ECD_00387 at 423.604 kb on + strand, within ECD_00387 at 423.839 kb on + strand, within ECD_00387 at 424.127 kb on + strand at 424.250 kb on - strand at 424.279 kb on + strand at 424.291 kb on + strand at 424.315 kb on + strand at 424.367 kb on + strand at 424.460 kb on + strand, within ECD_00388 at 424.460 kb on + strand, within ECD_00388 at 424.470 kb on + strand, within ECD_00388 at 424.576 kb on + strand, within ECD_00388 at 424.576 kb on + strand, within ECD_00388 at 424.580 kb on + strand, within ECD_00388 at 424.581 kb on - strand, within ECD_00388 at 424.591 kb on + strand, within ECD_00388 at 424.591 kb on + strand, within ECD_00388 at 424.627 kb on + strand, within ECD_00388 at 424.627 kb on + strand, within ECD_00388 at 424.628 kb on - strand, within ECD_00388 at 424.631 kb on + strand, within ECD_00388 at 424.631 kb on + strand, within ECD_00388 at 424.631 kb on + strand, within ECD_00388 at 424.884 kb on + strand, within ECD_00388 at 424.884 kb on + strand, within ECD_00388 at 425.010 kb on + strand at 425.010 kb on + strand at 425.010 kb on + strand at 425.014 kb on + strand at 425.036 kb on + strand at 425.149 kb on + strand at 425.212 kb on + strand at 425.212 kb on + strand at 425.237 kb on + strand at 425.237 kb on + strand at 425.338 kb on + strand, within ECD_00389 at 425.338 kb on + strand, within ECD_00389 at 425.386 kb on + strand, within ECD_00389 at 425.386 kb on + strand, within ECD_00389 at 425.386 kb on + strand, within ECD_00389 at 425.395 kb on + strand, within ECD_00389 at 425.395 kb on + strand, within ECD_00389 at 425.567 kb on - strand, within ECD_00389 at 425.646 kb on + strand, within ECD_00389 at 425.760 kb on + strand, within ECD_00389
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 423,395 + ECD_00387 0.44 -0.5 423,477 + ECD_00387 0.51 -0.2 423,478 - ECD_00387 0.51 -0.2 423,500 + ECD_00387 0.53 -0.4 423,500 + ECD_00387 0.53 +0.9 423,604 + ECD_00387 0.61 +0.7 423,839 + ECD_00387 0.79 -0.8 424,127 + +0.5 424,250 - -0.6 424,279 + -0.7 424,291 + +0.2 424,315 + -0.0 424,367 + -1.1 424,460 + ECD_00388 0.16 -1.9 424,460 + ECD_00388 0.16 -1.9 424,470 + ECD_00388 0.17 -1.9 424,576 + ECD_00388 0.34 -1.4 424,576 + ECD_00388 0.34 -2.9 424,580 + ECD_00388 0.35 -3.7 424,581 - ECD_00388 0.35 -4.1 424,591 + ECD_00388 0.37 -1.3 424,591 + ECD_00388 0.37 -2.7 424,627 + ECD_00388 0.43 -2.1 424,627 + ECD_00388 0.43 -2.7 424,628 - ECD_00388 0.43 -0.7 424,631 + ECD_00388 0.43 -4.0 424,631 + ECD_00388 0.43 -3.9 424,631 + ECD_00388 0.43 -3.8 424,884 + ECD_00388 0.84 -2.3 424,884 + ECD_00388 0.84 -3.5 425,010 + -0.2 425,010 + +0.2 425,010 + -0.3 425,014 + +0.2 425,036 + -0.1 425,149 + -2.8 425,212 + -2.5 425,212 + -1.4 425,237 + -2.7 425,237 + -2.4 425,338 + ECD_00389 0.18 -0.8 425,338 + ECD_00389 0.18 -2.3 425,386 + ECD_00389 0.22 -3.3 425,386 + ECD_00389 0.22 -2.7 425,386 + ECD_00389 0.22 -2.7 425,395 + ECD_00389 0.22 -2.3 425,395 + ECD_00389 0.22 -1.7 425,567 - ECD_00389 0.36 -2.8 425,646 + ECD_00389 0.42 -2.2 425,760 + ECD_00389 0.51 -2.1
Or see this region's nucleotide sequence