Strain Fitness in Escherichia coli BL21 around ECD_00305

Experiment: Mixed culture, Halobacteriovorax-10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00303 and ECD_00304 are separated by 9 nucleotidesECD_00304 and ECD_00305 overlap by 4 nucleotidesECD_00305 and ECD_00306 overlap by 4 nucleotides ECD_00303: ECD_00303 - 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase, at 340,774 to 341,640 _00303 ECD_00304: ECD_00304 - 2-keto-4-pentenoate hydratase, at 341,650 to 342,459 _00304 ECD_00305: ECD_00305 - acetaldehyde-CoA dehydrogenase II, NAD-binding, at 342,456 to 343,406 _00305 ECD_00306: ECD_00306 - 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase, class I, at 343,403 to 344,416 _00306 Position (kb) 342 343 344Strain fitness (log2 ratio) -2 -1 0 1at 341.554 kb on - strandat 341.661 kb on + strandat 341.661 kb on + strandat 341.661 kb on + strandat 341.661 kb on + strandat 341.662 kb on - strandat 341.780 kb on + strand, within ECD_00304at 341.780 kb on + strand, within ECD_00304at 341.781 kb on - strand, within ECD_00304at 341.781 kb on - strand, within ECD_00304at 341.781 kb on - strand, within ECD_00304at 341.791 kb on + strand, within ECD_00304at 341.827 kb on - strand, within ECD_00304at 341.894 kb on + strand, within ECD_00304at 341.895 kb on - strand, within ECD_00304at 342.028 kb on + strand, within ECD_00304at 342.029 kb on - strand, within ECD_00304at 342.048 kb on - strand, within ECD_00304at 342.139 kb on + strand, within ECD_00304at 342.139 kb on + strand, within ECD_00304at 342.140 kb on - strand, within ECD_00304at 342.140 kb on - strand, within ECD_00304at 342.140 kb on - strand, within ECD_00304at 342.211 kb on - strand, within ECD_00304at 342.264 kb on + strand, within ECD_00304at 342.328 kb on - strand, within ECD_00304at 342.347 kb on + strand, within ECD_00304at 342.404 kb on + strandat 342.404 kb on + strandat 342.404 kb on + strandat 342.404 kb on + strandat 342.405 kb on - strandat 342.603 kb on - strand, within ECD_00305at 342.676 kb on + strand, within ECD_00305at 342.676 kb on + strand, within ECD_00305at 342.676 kb on + strand, within ECD_00305at 342.926 kb on + strand, within ECD_00305at 342.935 kb on + strand, within ECD_00305at 343.086 kb on + strand, within ECD_00305at 343.086 kb on + strand, within ECD_00305at 343.086 kb on + strand, within ECD_00305at 343.087 kb on - strand, within ECD_00305at 343.087 kb on - strand, within ECD_00305at 343.087 kb on - strand, within ECD_00305at 343.090 kb on + strand, within ECD_00305at 343.090 kb on + strand, within ECD_00305at 343.091 kb on - strand, within ECD_00305at 343.091 kb on - strand, within ECD_00305at 343.161 kb on + strand, within ECD_00305at 343.162 kb on - strand, within ECD_00305at 343.162 kb on - strand, within ECD_00305at 343.162 kb on - strand, within ECD_00305at 343.162 kb on - strand, within ECD_00305at 343.166 kb on - strand, within ECD_00305at 343.311 kb on + strand, within ECD_00305at 343.331 kb on + strandat 343.421 kb on + strandat 343.573 kb on + strand, within ECD_00306at 343.574 kb on - strand, within ECD_00306at 343.577 kb on + strand, within ECD_00306at 343.578 kb on - strand, within ECD_00306at 343.769 kb on - strand, within ECD_00306at 343.826 kb on - strand, within ECD_00306at 343.888 kb on + strand, within ECD_00306at 343.888 kb on + strand, within ECD_00306at 343.892 kb on + strand, within ECD_00306at 343.892 kb on + strand, within ECD_00306at 343.892 kb on + strand, within ECD_00306at 344.165 kb on + strand, within ECD_00306at 344.327 kb on - strandat 344.374 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
remove
341,554 - +0.5
341,661 + +1.0
341,661 + +0.1
341,661 + +0.0
341,661 + -0.1
341,662 - -0.2
341,780 + ECD_00304 0.16 +0.4
341,780 + ECD_00304 0.16 -0.0
341,781 - ECD_00304 0.16 +0.3
341,781 - ECD_00304 0.16 -0.8
341,781 - ECD_00304 0.16 +0.2
341,791 + ECD_00304 0.17 +0.5
341,827 - ECD_00304 0.22 +0.1
341,894 + ECD_00304 0.30 -0.2
341,895 - ECD_00304 0.30 +0.1
342,028 + ECD_00304 0.47 -0.2
342,029 - ECD_00304 0.47 -0.0
342,048 - ECD_00304 0.49 +0.4
342,139 + ECD_00304 0.60 -0.5
342,139 + ECD_00304 0.60 -0.2
342,140 - ECD_00304 0.60 +0.3
342,140 - ECD_00304 0.60 +1.2
342,140 - ECD_00304 0.60 -1.3
342,211 - ECD_00304 0.69 -0.2
342,264 + ECD_00304 0.76 -0.1
342,328 - ECD_00304 0.84 +0.7
342,347 + ECD_00304 0.86 +0.1
342,404 + +0.1
342,404 + +0.1
342,404 + +0.3
342,404 + +0.5
342,405 - -0.6
342,603 - ECD_00305 0.15 +0.5
342,676 + ECD_00305 0.23 +0.4
342,676 + ECD_00305 0.23 +0.5
342,676 + ECD_00305 0.23 -0.1
342,926 + ECD_00305 0.49 +0.3
342,935 + ECD_00305 0.50 +0.4
343,086 + ECD_00305 0.66 -0.3
343,086 + ECD_00305 0.66 -0.4
343,086 + ECD_00305 0.66 +0.5
343,087 - ECD_00305 0.66 +0.4
343,087 - ECD_00305 0.66 +0.3
343,087 - ECD_00305 0.66 -0.9
343,090 + ECD_00305 0.67 -0.5
343,090 + ECD_00305 0.67 -2.2
343,091 - ECD_00305 0.67 +0.3
343,091 - ECD_00305 0.67 -0.9
343,161 + ECD_00305 0.74 +0.3
343,162 - ECD_00305 0.74 -0.0
343,162 - ECD_00305 0.74 +0.1
343,162 - ECD_00305 0.74 -1.0
343,162 - ECD_00305 0.74 -0.4
343,166 - ECD_00305 0.75 +0.1
343,311 + ECD_00305 0.90 -1.6
343,331 + +0.2
343,421 + +0.3
343,573 + ECD_00306 0.17 -0.1
343,574 - ECD_00306 0.17 +0.9
343,577 + ECD_00306 0.17 +0.9
343,578 - ECD_00306 0.17 -0.2
343,769 - ECD_00306 0.36 +0.1
343,826 - ECD_00306 0.42 -0.2
343,888 + ECD_00306 0.48 -0.2
343,888 + ECD_00306 0.48 -0.0
343,892 + ECD_00306 0.48 +0.5
343,892 + ECD_00306 0.48 -0.2
343,892 + ECD_00306 0.48 +0.2
344,165 + ECD_00306 0.75 -0.2
344,327 - -0.1
344,374 + +0.3

Or see this region's nucleotide sequence