Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00281 and ECD_00282 are separated by 412 nucleotides ECD_00282 and ECD_00283 are separated by 16 nucleotides ECD_00283 and ECD_00284 are separated by 146 nucleotides ECD_00284 and ECD_00285 are separated by 97 nucleotides
ECD_00281: ECD_00281 - uncharacterized protein, at 313,805 to 314,620
_00281
ECD_00282: ECD_00282 - uncharacterized protein, at 315,033 to 315,278
_00282
ECD_00283: ECD_00283 - amino acid exporter for proline, lysine, glutamate, homoserine, at 315,295 to 315,966
_00283
ECD_00284: ECD_00284 - periplasmic protein, function unknown, YhcN family, at 316,113 to 316,388
_00284
ECD_00285: ECD_00285 - propionate catabolism operon regulatory protein, at 316,486 to 318,072
_00285
Position (kb) 315
316 Strain fitness (log2 ratio) -1
0
1 at 314.348 kb on - strand, within ECD_00281 at 314.383 kb on + strand, within ECD_00281 at 314.513 kb on + strand, within ECD_00281 at 314.738 kb on + strand at 314.904 kb on + strand at 314.971 kb on - strand at 315.009 kb on + strand at 315.079 kb on + strand, within ECD_00282 at 315.080 kb on - strand, within ECD_00282 at 315.182 kb on + strand, within ECD_00282 at 315.183 kb on - strand, within ECD_00282 at 315.194 kb on + strand, within ECD_00282 at 315.194 kb on + strand, within ECD_00282 at 315.200 kb on + strand, within ECD_00282 at 315.209 kb on + strand, within ECD_00282 at 315.224 kb on - strand, within ECD_00282 at 315.276 kb on + strand at 315.276 kb on + strand at 315.276 kb on + strand at 315.277 kb on - strand at 315.277 kb on - strand at 315.317 kb on + strand at 315.345 kb on + strand at 315.346 kb on - strand at 315.478 kb on + strand, within ECD_00283 at 315.508 kb on + strand, within ECD_00283 at 315.619 kb on + strand, within ECD_00283 at 315.619 kb on + strand, within ECD_00283 at 315.842 kb on - strand, within ECD_00283 at 315.842 kb on - strand, within ECD_00283 at 316.033 kb on + strand at 316.056 kb on + strand at 316.376 kb on + strand at 316.404 kb on - strand at 316.713 kb on + strand, within ECD_00285 at 316.789 kb on + strand, within ECD_00285 at 316.916 kb on + strand, within ECD_00285 at 316.917 kb on - strand, within ECD_00285
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 314,348 - ECD_00281 0.67 +0.7 314,383 + ECD_00281 0.71 -0.4 314,513 + ECD_00281 0.87 -0.9 314,738 + +0.0 314,904 + +0.1 314,971 - +1.0 315,009 + -0.4 315,079 + ECD_00282 0.19 +0.2 315,080 - ECD_00282 0.19 +0.2 315,182 + ECD_00282 0.61 +0.3 315,183 - ECD_00282 0.61 -0.5 315,194 + ECD_00282 0.65 +1.4 315,194 + ECD_00282 0.65 -0.3 315,200 + ECD_00282 0.68 -0.2 315,209 + ECD_00282 0.72 +0.3 315,224 - ECD_00282 0.78 -0.3 315,276 + -0.5 315,276 + -1.0 315,276 + +0.3 315,277 - +0.5 315,277 - +0.1 315,317 + +0.8 315,345 + -0.2 315,346 - -0.6 315,478 + ECD_00283 0.27 +0.2 315,508 + ECD_00283 0.32 +0.2 315,619 + ECD_00283 0.48 +0.9 315,619 + ECD_00283 0.48 -1.2 315,842 - ECD_00283 0.81 -0.8 315,842 - ECD_00283 0.81 -0.2 316,033 + -0.3 316,056 + +0.4 316,376 + +0.5 316,404 - -0.1 316,713 + ECD_00285 0.14 +0.8 316,789 + ECD_00285 0.19 +0.7 316,916 + ECD_00285 0.27 -1.0 316,917 - ECD_00285 0.27 +0.4
Or see this region's nucleotide sequence