Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00273 and ECD_00274 are separated by 257 nucleotides ECD_00274 and ECD_00275 are separated by 39 nucleotides ECD_00275 and ECD_00276 overlap by 11 nucleotides
ECD_00273: ECD_00273 - putative inner membrane protein, at 304,153 to 304,650
_00273
ECD_00274: ECD_00274 - ankyrin repeat protein, at 304,908 to 305,513
_00274
ECD_00275: ECD_00275 - DUF2877 family protein, at 305,553 to 306,416
_00275
ECD_00276: ECD_00276 - putative NAD(P)-binding succinyl-CoA synthase, at 306,406 to 307,953
_00276
Position (kb) 305
306
307 Strain fitness (log2 ratio) -1
0
1 at 304.690 kb on + strand at 304.691 kb on - strand at 304.691 kb on - strand at 304.704 kb on - strand at 304.705 kb on + strand at 304.935 kb on + strand at 305.006 kb on + strand, within ECD_00274 at 305.170 kb on + strand, within ECD_00274 at 305.270 kb on - strand, within ECD_00274 at 305.433 kb on + strand, within ECD_00274 at 305.511 kb on + strand at 305.511 kb on + strand at 305.778 kb on - strand, within ECD_00275 at 305.778 kb on - strand, within ECD_00275 at 305.803 kb on + strand, within ECD_00275 at 305.803 kb on + strand, within ECD_00275 at 305.804 kb on - strand, within ECD_00275 at 306.326 kb on + strand, within ECD_00275 at 306.326 kb on + strand, within ECD_00275 at 306.405 kb on + strand at 306.419 kb on + strand at 306.420 kb on - strand at 306.439 kb on + strand at 306.484 kb on - strand at 306.672 kb on + strand, within ECD_00276 at 306.984 kb on + strand, within ECD_00276 at 307.167 kb on + strand, within ECD_00276 at 307.168 kb on - strand, within ECD_00276
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 304,690 + +0.5 304,691 - -0.2 304,691 - -0.0 304,704 - +0.1 304,705 + -0.1 304,935 + -1.1 305,006 + ECD_00274 0.16 -0.7 305,170 + ECD_00274 0.43 +0.6 305,270 - ECD_00274 0.60 -0.7 305,433 + ECD_00274 0.87 -0.6 305,511 + +0.2 305,511 + +0.7 305,778 - ECD_00275 0.26 +0.4 305,778 - ECD_00275 0.26 +0.8 305,803 + ECD_00275 0.29 +0.5 305,803 + ECD_00275 0.29 -0.2 305,804 - ECD_00275 0.29 +0.4 306,326 + ECD_00275 0.89 +0.6 306,326 + ECD_00275 0.89 +0.4 306,405 + +0.2 306,419 + -0.7 306,420 - -1.6 306,439 + -0.1 306,484 - -0.2 306,672 + ECD_00276 0.17 -0.0 306,984 + ECD_00276 0.37 +0.3 307,167 + ECD_00276 0.49 +1.1 307,168 - ECD_00276 0.49 +0.3
Or see this region's nucleotide sequence