Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00239 and ECD_00240 are separated by 11 nucleotides ECD_00240 and ECD_t00005 are separated by 114 nucleotides ECD_t00005 and ECD_00241 are separated by 126 nucleotides ECD_00241 and ECD_00242 overlap by 22 nucleotides
ECD_00239: ECD_00239 - gamma-glutamate kinase, at 264,883 to 265,986
_00239
ECD_00240: ECD_00240 - gamma-glutamylphosphate reductase, at 265,998 to 267,251
_00240
ECD_t00005: ECD_t00005 - tRNA-Thr, at 267,366 to 267,441
_t00005
ECD_00241: ECD_00241 - putative transcriptional regulator, at 267,568 to 267,978
_00241
ECD_00242: ECD_00242 - moco insertion factor for PaoABC aldehyde oxidoreductase, at 267,957 to 268,913
_00242
Position (kb) 265
266
267
268 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 265.163 kb on - strand, within ECD_00239 at 265.204 kb on - strand, within ECD_00239 at 265.266 kb on + strand, within ECD_00239 at 265.314 kb on + strand, within ECD_00239 at 265.314 kb on + strand, within ECD_00239 at 265.315 kb on - strand, within ECD_00239 at 265.406 kb on - strand, within ECD_00239 at 265.446 kb on + strand, within ECD_00239 at 265.446 kb on + strand, within ECD_00239 at 265.446 kb on + strand, within ECD_00239 at 265.721 kb on + strand, within ECD_00239 at 265.782 kb on + strand, within ECD_00239 at 265.783 kb on - strand, within ECD_00239 at 265.783 kb on - strand, within ECD_00239 at 265.870 kb on + strand, within ECD_00239 at 265.928 kb on + strand at 266.353 kb on - strand, within ECD_00240 at 266.353 kb on - strand, within ECD_00240 at 266.353 kb on - strand, within ECD_00240 at 266.570 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.662 kb on + strand, within ECD_00240 at 266.668 kb on + strand, within ECD_00240 at 266.679 kb on + strand, within ECD_00240 at 266.679 kb on + strand, within ECD_00240 at 266.679 kb on + strand, within ECD_00240 at 266.713 kb on + strand, within ECD_00240 at 266.713 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.757 kb on - strand, within ECD_00240 at 266.760 kb on - strand, within ECD_00240 at 266.816 kb on - strand, within ECD_00240 at 266.848 kb on + strand, within ECD_00240 at 267.090 kb on + strand, within ECD_00240 at 267.113 kb on + strand, within ECD_00240 at 267.210 kb on + strand at 267.210 kb on + strand at 267.210 kb on + strand at 267.211 kb on - strand at 267.211 kb on - strand at 267.234 kb on + strand at 267.250 kb on - strand at 267.250 kb on - strand at 267.253 kb on + strand at 267.253 kb on + strand at 267.373 kb on + strand at 267.373 kb on + strand at 267.444 kb on + strand at 267.453 kb on + strand at 267.469 kb on - strand at 267.510 kb on + strand at 267.510 kb on + strand at 267.510 kb on + strand at 267.511 kb on - strand at 267.511 kb on - strand at 267.651 kb on - strand, within ECD_00241 at 267.657 kb on - strand, within ECD_00241 at 267.697 kb on + strand, within ECD_00241 at 267.718 kb on - strand, within ECD_00241 at 267.720 kb on - strand, within ECD_00241 at 267.720 kb on - strand, within ECD_00241 at 267.720 kb on - strand, within ECD_00241 at 267.805 kb on - strand, within ECD_00241 at 267.805 kb on - strand, within ECD_00241 at 267.903 kb on + strand, within ECD_00241 at 267.904 kb on - strand, within ECD_00241 at 267.910 kb on - strand, within ECD_00241 at 267.910 kb on - strand, within ECD_00241 at 267.910 kb on - strand, within ECD_00241 at 268.003 kb on - strand at 268.003 kb on - strand at 268.003 kb on - strand at 268.003 kb on - strand at 268.040 kb on + strand at 268.174 kb on + strand, within ECD_00242
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 265,163 - ECD_00239 0.25 -2.2 265,204 - ECD_00239 0.29 -1.4 265,266 + ECD_00239 0.35 -2.4 265,314 + ECD_00239 0.39 -2.3 265,314 + ECD_00239 0.39 -1.2 265,315 - ECD_00239 0.39 -1.9 265,406 - ECD_00239 0.47 -0.9 265,446 + ECD_00239 0.51 -1.8 265,446 + ECD_00239 0.51 -2.0 265,446 + ECD_00239 0.51 -1.5 265,721 + ECD_00239 0.76 +0.7 265,782 + ECD_00239 0.81 -1.3 265,783 - ECD_00239 0.82 -0.3 265,783 - ECD_00239 0.82 -0.8 265,870 + ECD_00239 0.89 -1.9 265,928 + -1.7 266,353 - ECD_00240 0.28 -1.2 266,353 - ECD_00240 0.28 -2.6 266,353 - ECD_00240 0.28 -1.2 266,570 + ECD_00240 0.46 -0.9 266,574 + ECD_00240 0.46 -3.0 266,574 + ECD_00240 0.46 -1.1 266,574 + ECD_00240 0.46 -1.2 266,574 + ECD_00240 0.46 -0.9 266,662 + ECD_00240 0.53 -3.3 266,668 + ECD_00240 0.53 -1.9 266,679 + ECD_00240 0.54 -1.8 266,679 + ECD_00240 0.54 -1.5 266,679 + ECD_00240 0.54 -2.6 266,713 + ECD_00240 0.57 -1.2 266,713 + ECD_00240 0.57 -1.4 266,756 + ECD_00240 0.60 -1.3 266,756 + ECD_00240 0.60 -1.3 266,756 + ECD_00240 0.60 -1.8 266,756 + ECD_00240 0.60 -1.2 266,756 + ECD_00240 0.60 -1.3 266,757 - ECD_00240 0.61 -0.9 266,760 - ECD_00240 0.61 -1.7 266,816 - ECD_00240 0.65 -1.4 266,848 + ECD_00240 0.68 -2.3 267,090 + ECD_00240 0.87 -1.7 267,113 + ECD_00240 0.89 -1.3 267,210 + -1.8 267,210 + -1.0 267,210 + -1.4 267,211 - -1.6 267,211 - -1.3 267,234 + +0.1 267,250 - -0.0 267,250 - +1.0 267,253 + -0.0 267,253 + +1.2 267,373 + +0.7 267,373 + +0.0 267,444 + +0.0 267,453 + -0.2 267,469 - -1.3 267,510 + -0.3 267,510 + -0.5 267,510 + -0.0 267,511 - +0.0 267,511 - -0.2 267,651 - ECD_00241 0.20 +0.4 267,657 - ECD_00241 0.22 +0.5 267,697 + ECD_00241 0.31 -0.5 267,718 - ECD_00241 0.36 -0.8 267,720 - ECD_00241 0.37 -0.3 267,720 - ECD_00241 0.37 -0.4 267,720 - ECD_00241 0.37 -0.4 267,805 - ECD_00241 0.58 -1.0 267,805 - ECD_00241 0.58 +0.2 267,903 + ECD_00241 0.82 -0.3 267,904 - ECD_00241 0.82 +0.5 267,910 - ECD_00241 0.83 +0.2 267,910 - ECD_00241 0.83 +1.2 267,910 - ECD_00241 0.83 -0.0 268,003 - -0.2 268,003 - -0.2 268,003 - -0.9 268,003 - -0.6 268,040 + +0.4 268,174 + ECD_00242 0.23 +0.4
Or see this region's nucleotide sequence