Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00238 and ECD_00239 are separated by 287 nucleotides ECD_00239 and ECD_00240 are separated by 11 nucleotides
ECD_00238: ECD_00238 - outer membrane phosphoporin protein E, at 263,558 to 264,595
_00238
ECD_00239: ECD_00239 - gamma-glutamate kinase, at 264,883 to 265,986
_00239
ECD_00240: ECD_00240 - gamma-glutamylphosphate reductase, at 265,998 to 267,251
_00240
Position (kb) 264
265
266 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 263.971 kb on + strand, within ECD_00238 at 263.983 kb on + strand, within ECD_00238 at 264.013 kb on - strand, within ECD_00238 at 264.238 kb on - strand, within ECD_00238 at 264.238 kb on - strand, within ECD_00238 at 264.467 kb on - strand, within ECD_00238 at 264.573 kb on - strand at 264.727 kb on + strand at 264.849 kb on + strand at 264.908 kb on + strand at 264.908 kb on + strand at 264.929 kb on + strand at 264.995 kb on + strand, within ECD_00239 at 265.163 kb on - strand, within ECD_00239 at 265.204 kb on - strand, within ECD_00239 at 265.266 kb on + strand, within ECD_00239 at 265.314 kb on + strand, within ECD_00239 at 265.314 kb on + strand, within ECD_00239 at 265.315 kb on - strand, within ECD_00239 at 265.406 kb on - strand, within ECD_00239 at 265.446 kb on + strand, within ECD_00239 at 265.446 kb on + strand, within ECD_00239 at 265.446 kb on + strand, within ECD_00239 at 265.721 kb on + strand, within ECD_00239 at 265.782 kb on + strand, within ECD_00239 at 265.783 kb on - strand, within ECD_00239 at 265.783 kb on - strand, within ECD_00239 at 265.870 kb on + strand, within ECD_00239 at 265.928 kb on + strand at 266.353 kb on - strand, within ECD_00240 at 266.353 kb on - strand, within ECD_00240 at 266.353 kb on - strand, within ECD_00240 at 266.570 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.574 kb on + strand, within ECD_00240 at 266.662 kb on + strand, within ECD_00240 at 266.668 kb on + strand, within ECD_00240 at 266.679 kb on + strand, within ECD_00240 at 266.679 kb on + strand, within ECD_00240 at 266.679 kb on + strand, within ECD_00240 at 266.713 kb on + strand, within ECD_00240 at 266.713 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.756 kb on + strand, within ECD_00240 at 266.757 kb on - strand, within ECD_00240 at 266.760 kb on - strand, within ECD_00240 at 266.816 kb on - strand, within ECD_00240 at 266.848 kb on + strand, within ECD_00240
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 263,971 + ECD_00238 0.40 +0.9 263,983 + ECD_00238 0.41 +0.6 264,013 - ECD_00238 0.44 +0.6 264,238 - ECD_00238 0.66 -0.4 264,238 - ECD_00238 0.66 +0.1 264,467 - ECD_00238 0.88 +0.4 264,573 - +0.7 264,727 + +0.9 264,849 + +0.9 264,908 + -2.3 264,908 + -1.4 264,929 + -1.6 264,995 + ECD_00239 0.10 -0.7 265,163 - ECD_00239 0.25 -2.2 265,204 - ECD_00239 0.29 -1.4 265,266 + ECD_00239 0.35 -2.4 265,314 + ECD_00239 0.39 -2.3 265,314 + ECD_00239 0.39 -1.2 265,315 - ECD_00239 0.39 -1.9 265,406 - ECD_00239 0.47 -0.9 265,446 + ECD_00239 0.51 -1.8 265,446 + ECD_00239 0.51 -2.0 265,446 + ECD_00239 0.51 -1.5 265,721 + ECD_00239 0.76 +0.7 265,782 + ECD_00239 0.81 -1.3 265,783 - ECD_00239 0.82 -0.3 265,783 - ECD_00239 0.82 -0.8 265,870 + ECD_00239 0.89 -1.9 265,928 + -1.7 266,353 - ECD_00240 0.28 -1.2 266,353 - ECD_00240 0.28 -2.6 266,353 - ECD_00240 0.28 -1.2 266,570 + ECD_00240 0.46 -0.9 266,574 + ECD_00240 0.46 -3.0 266,574 + ECD_00240 0.46 -1.1 266,574 + ECD_00240 0.46 -1.2 266,574 + ECD_00240 0.46 -0.9 266,662 + ECD_00240 0.53 -3.3 266,668 + ECD_00240 0.53 -1.9 266,679 + ECD_00240 0.54 -1.8 266,679 + ECD_00240 0.54 -1.5 266,679 + ECD_00240 0.54 -2.6 266,713 + ECD_00240 0.57 -1.2 266,713 + ECD_00240 0.57 -1.4 266,756 + ECD_00240 0.60 -1.3 266,756 + ECD_00240 0.60 -1.3 266,756 + ECD_00240 0.60 -1.8 266,756 + ECD_00240 0.60 -1.2 266,756 + ECD_00240 0.60 -1.3 266,757 - ECD_00240 0.61 -0.9 266,760 - ECD_00240 0.61 -1.7 266,816 - ECD_00240 0.65 -1.4 266,848 + ECD_00240 0.68 -2.3
Or see this region's nucleotide sequence