Strain Fitness in Escherichia coli BL21 around ECD_00176

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00175 and ECD_00176 are separated by 121 nucleotidesECD_00176 and ECD_00177 are separated by 3 nucleotides ECD_00175: ECD_00175 - BamABCDE complex OM biogenesis outer membrane pore-forming assembly factor, at 200,771 to 203,203 _00175 ECD_00176: ECD_00176 - periplasmic chaperone, at 203,325 to 203,810 _00176 ECD_00177: ECD_00177 - UDP-3-O-(3-hydroxymyristoyl)-glucosamine N-acyltransferase, at 203,814 to 204,839 _00177 Position (kb) 203 204Strain fitness (log2 ratio) -1 0 1at 203.201 kb on + strandat 203.201 kb on + strandat 203.201 kb on + strandat 203.224 kb on + strandat 203.224 kb on + strandat 203.224 kb on + strandat 203.260 kb on + strandat 203.321 kb on + strandat 203.338 kb on + strandat 203.341 kb on + strandat 203.522 kb on + strand, within ECD_00176

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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203,201 + +0.4
203,201 + -0.1
203,201 + +0.1
203,224 + +0.2
203,224 + -0.1
203,224 + +0.0
203,260 + +0.0
203,321 + -0.9
203,338 + -1.0
203,341 + -0.8
203,522 + ECD_00176 0.41 -1.6

Or see this region's nucleotide sequence