Strain Fitness in Escherichia coli BL21 around ECD_00148

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00147 and ECD_00148 are separated by 195 nucleotidesECD_00148 and ECD_00149 are separated by 219 nucleotides ECD_00147: ECD_00147 - putative ATP-dependent helicase, at 164,957 to 167,386 _00147 ECD_00148: ECD_00148 - fused glycosyl transferase and transpeptidase, at 167,582 to 170,107 _00148 ECD_00149: ECD_00149 - ferrichrome outer membrane transporter, at 170,327 to 172,570 _00149 Position (kb) 167 168 169 170 171Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 166.622 kb on - strand, within ECD_00147at 166.622 kb on - strand, within ECD_00147at 166.632 kb on + strand, within ECD_00147at 166.632 kb on + strand, within ECD_00147at 166.633 kb on - strand, within ECD_00147at 166.635 kb on + strand, within ECD_00147at 166.818 kb on + strand, within ECD_00147at 166.819 kb on - strand, within ECD_00147at 166.854 kb on + strand, within ECD_00147at 166.855 kb on - strand, within ECD_00147at 166.855 kb on - strand, within ECD_00147at 166.870 kb on - strand, within ECD_00147at 166.960 kb on + strand, within ECD_00147at 166.960 kb on + strand, within ECD_00147at 167.025 kb on + strand, within ECD_00147at 167.075 kb on + strand, within ECD_00147at 167.075 kb on + strand, within ECD_00147at 167.076 kb on - strand, within ECD_00147at 167.241 kb on + strandat 167.384 kb on + strandat 167.511 kb on + strandat 167.512 kb on - strandat 167.681 kb on + strandat 167.690 kb on + strandat 167.690 kb on + strandat 167.691 kb on - strandat 167.700 kb on - strandat 167.700 kb on - strandat 167.732 kb on - strandat 167.732 kb on - strandat 167.752 kb on + strandat 167.752 kb on + strandat 167.785 kb on - strandat 167.790 kb on + strandat 168.380 kb on - strand, within ECD_00148at 168.380 kb on - strand, within ECD_00148at 168.432 kb on - strand, within ECD_00148at 168.455 kb on + strand, within ECD_00148at 168.456 kb on - strand, within ECD_00148at 168.456 kb on - strand, within ECD_00148at 168.456 kb on - strand, within ECD_00148at 168.457 kb on + strand, within ECD_00148at 168.458 kb on - strand, within ECD_00148at 168.509 kb on + strand, within ECD_00148at 168.510 kb on - strand, within ECD_00148at 168.524 kb on + strand, within ECD_00148at 168.525 kb on - strand, within ECD_00148at 168.581 kb on + strand, within ECD_00148at 168.581 kb on + strand, within ECD_00148at 168.581 kb on + strand, within ECD_00148at 168.630 kb on + strand, within ECD_00148at 168.700 kb on + strand, within ECD_00148at 168.701 kb on - strand, within ECD_00148at 168.823 kb on + strand, within ECD_00148at 168.859 kb on - strand, within ECD_00148at 168.976 kb on + strand, within ECD_00148at 168.977 kb on - strand, within ECD_00148at 168.977 kb on - strand, within ECD_00148at 168.977 kb on - strand, within ECD_00148at 169.021 kb on + strand, within ECD_00148at 169.172 kb on - strand, within ECD_00148at 169.314 kb on + strand, within ECD_00148at 169.583 kb on + strand, within ECD_00148at 169.698 kb on + strand, within ECD_00148at 169.698 kb on + strand, within ECD_00148at 169.698 kb on + strand, within ECD_00148at 169.699 kb on - strand, within ECD_00148at 169.699 kb on - strand, within ECD_00148at 169.699 kb on - strand, within ECD_00148at 169.782 kb on - strand, within ECD_00148at 169.809 kb on - strand, within ECD_00148at 169.817 kb on + strand, within ECD_00148at 169.818 kb on - strand, within ECD_00148at 169.889 kb on + strandat 170.089 kb on + strandat 170.089 kb on + strandat 170.090 kb on - strandat 170.090 kb on - strandat 170.101 kb on + strandat 170.102 kb on - strandat 170.112 kb on + strandat 170.112 kb on + strandat 170.154 kb on - strandat 170.171 kb on - strandat 170.263 kb on - strandat 170.267 kb on + strandat 170.275 kb on + strandat 170.309 kb on + strandat 170.321 kb on - strandat 170.322 kb on + strandat 170.322 kb on + strandat 170.322 kb on + strandat 170.382 kb on + strandat 170.386 kb on - strandat 170.450 kb on - strandat 170.507 kb on - strandat 170.572 kb on + strand, within ECD_00149at 170.635 kb on + strand, within ECD_00149at 170.684 kb on + strand, within ECD_00149at 170.684 kb on + strand, within ECD_00149at 170.735 kb on - strand, within ECD_00149at 170.738 kb on + strand, within ECD_00149at 170.738 kb on + strand, within ECD_00149at 170.771 kb on + strand, within ECD_00149at 170.771 kb on + strand, within ECD_00149at 170.795 kb on + strand, within ECD_00149at 170.795 kb on + strand, within ECD_00149at 170.797 kb on + strand, within ECD_00149at 170.798 kb on - strand, within ECD_00149at 170.849 kb on - strand, within ECD_00149at 170.994 kb on - strand, within ECD_00149at 171.062 kb on + strand, within ECD_00149at 171.062 kb on + strand, within ECD_00149at 171.067 kb on + strand, within ECD_00149at 171.068 kb on - strand, within ECD_00149at 171.068 kb on - strand, within ECD_00149

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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166,622 - ECD_00147 0.69 -0.0
166,622 - ECD_00147 0.69 -0.0
166,632 + ECD_00147 0.69 -0.3
166,632 + ECD_00147 0.69 -0.8
166,633 - ECD_00147 0.69 +0.0
166,635 + ECD_00147 0.69 +1.0
166,818 + ECD_00147 0.77 +0.2
166,819 - ECD_00147 0.77 -0.3
166,854 + ECD_00147 0.78 +0.1
166,855 - ECD_00147 0.78 -0.7
166,855 - ECD_00147 0.78 +0.7
166,870 - ECD_00147 0.79 -0.1
166,960 + ECD_00147 0.82 +0.6
166,960 + ECD_00147 0.82 -0.1
167,025 + ECD_00147 0.85 +0.9
167,075 + ECD_00147 0.87 +0.4
167,075 + ECD_00147 0.87 +0.5
167,076 - ECD_00147 0.87 -0.0
167,241 + -0.3
167,384 + -0.6
167,511 + -0.6
167,512 - +1.5
167,681 + +0.6
167,690 + -0.2
167,690 + +0.1
167,691 - -1.7
167,700 - -0.5
167,700 - -2.2
167,732 - -1.5
167,732 - -1.0
167,752 + -1.2
167,752 + -0.7
167,785 - -2.0
167,790 + -0.1
168,380 - ECD_00148 0.32 -1.6
168,380 - ECD_00148 0.32 -1.1
168,432 - ECD_00148 0.34 -2.5
168,455 + ECD_00148 0.35 -2.2
168,456 - ECD_00148 0.35 -2.5
168,456 - ECD_00148 0.35 -1.3
168,456 - ECD_00148 0.35 -2.0
168,457 + ECD_00148 0.35 -2.2
168,458 - ECD_00148 0.35 -0.2
168,509 + ECD_00148 0.37 -1.7
168,510 - ECD_00148 0.37 -1.6
168,524 + ECD_00148 0.37 -1.4
168,525 - ECD_00148 0.37 -1.4
168,581 + ECD_00148 0.40 -1.0
168,581 + ECD_00148 0.40 -1.5
168,581 + ECD_00148 0.40 -2.6
168,630 + ECD_00148 0.41 -1.9
168,700 + ECD_00148 0.44 -1.2
168,701 - ECD_00148 0.44 -1.7
168,823 + ECD_00148 0.49 -1.9
168,859 - ECD_00148 0.51 -1.5
168,976 + ECD_00148 0.55 -1.3
168,977 - ECD_00148 0.55 -2.2
168,977 - ECD_00148 0.55 -1.1
168,977 - ECD_00148 0.55 -2.1
169,021 + ECD_00148 0.57 -2.0
169,172 - ECD_00148 0.63 -1.1
169,314 + ECD_00148 0.69 -0.6
169,583 + ECD_00148 0.79 -0.4
169,698 + ECD_00148 0.84 -1.2
169,698 + ECD_00148 0.84 -1.5
169,698 + ECD_00148 0.84 -3.0
169,699 - ECD_00148 0.84 -1.1
169,699 - ECD_00148 0.84 -0.8
169,699 - ECD_00148 0.84 -1.0
169,782 - ECD_00148 0.87 -2.2
169,809 - ECD_00148 0.88 -1.7
169,817 + ECD_00148 0.88 -1.6
169,818 - ECD_00148 0.89 -1.6
169,889 + -0.6
170,089 + -0.2
170,089 + -0.3
170,090 - +0.3
170,090 - +0.1
170,101 + -0.5
170,102 - +0.4
170,112 + -0.5
170,112 + -0.4
170,154 - -0.0
170,171 - -0.1
170,263 - +0.0
170,267 + -0.4
170,275 + -0.2
170,309 + -0.6
170,321 - -0.2
170,322 + +0.0
170,322 + +0.1
170,322 + -0.4
170,382 + -0.3
170,386 - +0.0
170,450 - -0.2
170,507 - -0.8
170,572 + ECD_00149 0.11 -1.3
170,635 + ECD_00149 0.14 -0.0
170,684 + ECD_00149 0.16 -0.1
170,684 + ECD_00149 0.16 +0.5
170,735 - ECD_00149 0.18 +0.6
170,738 + ECD_00149 0.18 -0.6
170,738 + ECD_00149 0.18 -0.6
170,771 + ECD_00149 0.20 -0.9
170,771 + ECD_00149 0.20 +2.0
170,795 + ECD_00149 0.21 +0.1
170,795 + ECD_00149 0.21 +0.3
170,797 + ECD_00149 0.21 +0.2
170,798 - ECD_00149 0.21 -0.1
170,849 - ECD_00149 0.23 +0.1
170,994 - ECD_00149 0.30 -0.4
171,062 + ECD_00149 0.33 -0.4
171,062 + ECD_00149 0.33 +0.4
171,067 + ECD_00149 0.33 -0.2
171,068 - ECD_00149 0.33 -0.3
171,068 - ECD_00149 0.33 -0.5

Or see this region's nucleotide sequence