Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00132 and ECD_00133 are separated by 11 nucleotides ECD_00133 and ECD_00134 are separated by 112 nucleotides ECD_00134 and ECD_00135 overlap by 20 nucleotides ECD_00135 and ECD_00136 are separated by 26 nucleotides
ECD_00132: ECD_00132 - pantothenate synthetase, at 150,748 to 151,599
_00132
ECD_00133: ECD_00133 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 151,611 to 152,405
_00133
ECD_00134: ECD_00134 - putative fimbrial-like adhesin protein, at 152,518 to 153,864
_00134
ECD_00135: ECD_00135 - putative fimbrial-like adhesin protein, at 153,845 to 154,441
_00135
ECD_00136: ECD_00136 - putative fimbrial-like adhesin protein, at 154,468 to 155,070
_00136
Position (kb)
152
153
154 Strain fitness (log2 ratio)
-2
-1
0
1 at 151.594 kb on + strand at 151.664 kb on + strand at 151.666 kb on + strand at 151.666 kb on + strand at 151.666 kb on + strand at 151.667 kb on - strand at 151.667 kb on - strand at 151.667 kb on - strand at 151.724 kb on + strand, within ECD_00133 at 151.835 kb on + strand, within ECD_00133 at 151.897 kb on - strand, within ECD_00133 at 151.902 kb on + strand, within ECD_00133 at 151.903 kb on - strand, within ECD_00133 at 151.951 kb on - strand, within ECD_00133 at 151.958 kb on - strand, within ECD_00133 at 151.996 kb on - strand, within ECD_00133 at 151.996 kb on - strand, within ECD_00133 at 152.047 kb on - strand, within ECD_00133 at 152.138 kb on - strand, within ECD_00133 at 152.190 kb on + strand, within ECD_00133 at 152.191 kb on - strand, within ECD_00133 at 152.191 kb on - strand, within ECD_00133 at 152.191 kb on - strand, within ECD_00133 at 152.292 kb on - strand, within ECD_00133 at 152.325 kb on - strand, within ECD_00133 at 152.361 kb on - strand at 152.369 kb on + strand at 152.445 kb on + strand at 152.475 kb on - strand at 152.481 kb on + strand at 152.516 kb on + strand at 152.516 kb on + strand at 152.517 kb on - strand at 152.569 kb on + strand at 152.570 kb on - strand at 152.577 kb on + strand at 152.594 kb on - strand at 152.619 kb on - strand at 152.619 kb on - strand at 152.623 kb on + strand at 152.623 kb on + strand at 152.624 kb on - strand at 152.625 kb on + strand at 152.625 kb on + strand at 152.625 kb on + strand at 152.625 kb on + strand at 152.626 kb on - strand at 152.626 kb on - strand at 152.764 kb on + strand, within ECD_00134 at 152.790 kb on + strand, within ECD_00134 at 152.791 kb on - strand, within ECD_00134 at 152.806 kb on - strand, within ECD_00134 at 152.941 kb on - strand, within ECD_00134 at 153.710 kb on - strand, within ECD_00134 at 154.442 kb on - strand at 154.443 kb on + strand at 154.470 kb on - strand at 154.574 kb on + strand, within ECD_00136 at 154.636 kb on - strand, within ECD_00136
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 151,594 + +0.5 151,664 + -1.0 151,666 + -0.4 151,666 + -0.1 151,666 + -0.3 151,667 - +0.0 151,667 - -0.2 151,667 - +0.2 151,724 + ECD_00133 0.14 +0.3 151,835 + ECD_00133 0.28 -0.8 151,897 - ECD_00133 0.36 +0.3 151,902 + ECD_00133 0.37 -0.3 151,903 - ECD_00133 0.37 -1.8 151,951 - ECD_00133 0.43 +0.1 151,958 - ECD_00133 0.44 -0.1 151,996 - ECD_00133 0.48 +0.4 151,996 - ECD_00133 0.48 +0.4 152,047 - ECD_00133 0.55 +0.3 152,138 - ECD_00133 0.66 +0.3 152,190 + ECD_00133 0.73 -0.6 152,191 - ECD_00133 0.73 -0.4 152,191 - ECD_00133 0.73 +0.7 152,191 - ECD_00133 0.73 +0.8 152,292 - ECD_00133 0.86 -0.3 152,325 - ECD_00133 0.90 -0.4 152,361 - +0.0 152,369 + +0.1 152,445 + -0.4 152,475 - -0.6 152,481 + -0.1 152,516 + -0.2 152,516 + +0.3 152,517 - +0.4 152,569 + -0.4 152,570 - +0.4 152,577 + +0.3 152,594 - -1.1 152,619 - +0.6 152,619 - +0.3 152,623 + +0.6 152,623 + -0.0 152,624 - +0.7 152,625 + +0.3 152,625 + +0.0 152,625 + -0.5 152,625 + -0.2 152,626 - +0.6 152,626 - +0.1 152,764 + ECD_00134 0.18 +0.7 152,790 + ECD_00134 0.20 +0.2 152,791 - ECD_00134 0.20 -0.4 152,806 - ECD_00134 0.21 +0.4 152,941 - ECD_00134 0.31 +1.2 153,710 - ECD_00134 0.88 +0.7 154,442 - +0.5 154,443 + +0.1 154,470 - +0.7 154,574 + ECD_00136 0.18 -1.0 154,636 - ECD_00136 0.28 +0.7
Or see this region's nucleotide sequence