Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00112 and ECD_00113 are separated by 160 nucleotides ECD_00113 and ECD_00114 are separated by 14 nucleotides
ECD_00112: ECD_00112 - pyruvate dehydrogenase complex repressor; autorepressor, at 124,897 to 125,661
_00112
ECD_00113: ECD_00113 - pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate-binding, at 125,822 to 128,485
_00113
ECD_00114: ECD_00114 - pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2, at 128,500 to 130,392
_00114
Position (kb) 125
126
127
128
129 Strain fitness (log2 ratio) -1
0
1 at 124.883 kb on + strand at 124.903 kb on + strand at 124.903 kb on + strand at 125.188 kb on + strand, within ECD_00112 at 125.188 kb on + strand, within ECD_00112 at 125.188 kb on + strand, within ECD_00112 at 125.223 kb on + strand, within ECD_00112 at 125.233 kb on + strand, within ECD_00112 at 125.236 kb on + strand, within ECD_00112 at 125.405 kb on + strand, within ECD_00112 at 125.412 kb on + strand, within ECD_00112 at 125.412 kb on + strand, within ECD_00112 at 125.412 kb on + strand, within ECD_00112 at 125.412 kb on + strand, within ECD_00112 at 125.412 kb on + strand, within ECD_00112 at 125.461 kb on + strand, within ECD_00112 at 125.510 kb on + strand, within ECD_00112 at 125.733 kb on + strand at 127.172 kb on + strand, within ECD_00113 at 127.856 kb on + strand, within ECD_00113
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 124,883 + -0.5 124,903 + -0.6 124,903 + -0.4 125,188 + ECD_00112 0.38 -0.4 125,188 + ECD_00112 0.38 -0.5 125,188 + ECD_00112 0.38 -1.0 125,223 + ECD_00112 0.43 -0.7 125,233 + ECD_00112 0.44 -0.9 125,236 + ECD_00112 0.44 -0.6 125,405 + ECD_00112 0.66 -0.4 125,412 + ECD_00112 0.67 -0.4 125,412 + ECD_00112 0.67 -0.2 125,412 + ECD_00112 0.67 -0.8 125,412 + ECD_00112 0.67 -0.6 125,412 + ECD_00112 0.67 -0.2 125,461 + ECD_00112 0.74 -0.3 125,510 + ECD_00112 0.80 -0.3 125,733 + +0.1 127,172 + ECD_00113 0.51 -0.6 127,856 + ECD_00113 0.76 -1.2
Or see this region's nucleotide sequence