Strain Fitness in Escherichia coli BL21 around ECD_00111

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00109 and ECD_00110 overlap by 4 nucleotidesECD_00110 and ECD_00111 are separated by 42 nucleotidesECD_00111 and ECD_00112 are separated by 540 nucleotides ECD_00109: ECD_00109 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase, Zn-dependent; murein amidase, at 121,538 to 122,089 _00109 ECD_00110: ECD_00110 - ampicillin resistance inner membrane protein; putative signaling protein in beta-lactamase regulation, at 122,086 to 122,940 _00110 ECD_00111: ECD_00111 - aromatic amino acid transporter, at 122,983 to 124,356 _00111 ECD_00112: ECD_00112 - pyruvate dehydrogenase complex repressor; autorepressor, at 124,897 to 125,661 _00112 Position (kb) 122 123 124 125Strain fitness (log2 ratio) -1 0 1at 122.005 kb on + strand, within ECD_00109at 122.006 kb on - strand, within ECD_00109at 122.093 kb on + strandat 122.098 kb on - strandat 122.098 kb on - strandat 122.229 kb on + strand, within ECD_00110at 122.230 kb on - strand, within ECD_00110at 122.259 kb on - strand, within ECD_00110at 122.276 kb on + strand, within ECD_00110at 122.340 kb on + strand, within ECD_00110at 122.341 kb on - strand, within ECD_00110at 122.365 kb on + strand, within ECD_00110at 122.365 kb on + strand, within ECD_00110at 122.365 kb on + strand, within ECD_00110at 122.366 kb on - strand, within ECD_00110at 122.366 kb on - strand, within ECD_00110at 122.366 kb on - strand, within ECD_00110at 122.366 kb on - strand, within ECD_00110at 122.385 kb on + strand, within ECD_00110at 122.385 kb on + strand, within ECD_00110at 122.503 kb on - strand, within ECD_00110at 122.669 kb on + strand, within ECD_00110at 122.705 kb on + strand, within ECD_00110at 122.705 kb on + strand, within ECD_00110at 122.706 kb on - strand, within ECD_00110at 122.706 kb on - strand, within ECD_00110at 122.707 kb on + strand, within ECD_00110at 122.707 kb on + strand, within ECD_00110at 122.707 kb on + strand, within ECD_00110at 122.707 kb on + strand, within ECD_00110at 122.708 kb on - strand, within ECD_00110at 122.708 kb on - strand, within ECD_00110at 122.782 kb on + strand, within ECD_00110at 122.945 kb on + strandat 122.962 kb on - strandat 122.976 kb on - strandat 123.034 kb on - strandat 123.037 kb on + strandat 123.037 kb on + strandat 123.066 kb on - strandat 123.153 kb on - strand, within ECD_00111at 123.244 kb on + strand, within ECD_00111at 123.244 kb on + strand, within ECD_00111at 123.302 kb on + strand, within ECD_00111at 123.302 kb on + strand, within ECD_00111at 123.303 kb on - strand, within ECD_00111at 123.303 kb on - strand, within ECD_00111at 123.303 kb on - strand, within ECD_00111at 123.307 kb on - strand, within ECD_00111at 123.351 kb on + strand, within ECD_00111at 123.356 kb on - strand, within ECD_00111at 123.429 kb on + strand, within ECD_00111at 123.444 kb on - strand, within ECD_00111at 123.446 kb on - strand, within ECD_00111at 123.446 kb on - strand, within ECD_00111at 123.458 kb on + strand, within ECD_00111at 123.458 kb on + strand, within ECD_00111at 123.459 kb on - strand, within ECD_00111at 123.482 kb on - strand, within ECD_00111at 123.611 kb on + strand, within ECD_00111at 123.612 kb on - strand, within ECD_00111at 123.629 kb on + strand, within ECD_00111at 123.630 kb on - strand, within ECD_00111at 123.730 kb on - strand, within ECD_00111at 123.833 kb on - strand, within ECD_00111at 124.007 kb on + strand, within ECD_00111at 124.008 kb on - strand, within ECD_00111at 124.012 kb on - strand, within ECD_00111at 124.235 kb on - strandat 124.235 kb on - strandat 124.235 kb on - strandat 124.291 kb on - strandat 124.299 kb on + strandat 124.389 kb on - strandat 124.708 kb on + strandat 124.728 kb on - strandat 124.731 kb on + strandat 124.749 kb on + strandat 124.750 kb on - strandat 124.751 kb on + strandat 124.883 kb on + strandat 124.903 kb on + strandat 124.903 kb on + strandat 125.188 kb on + strand, within ECD_00112at 125.188 kb on + strand, within ECD_00112at 125.188 kb on + strand, within ECD_00112at 125.223 kb on + strand, within ECD_00112at 125.233 kb on + strand, within ECD_00112at 125.236 kb on + strand, within ECD_00112

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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122,005 + ECD_00109 0.85 -0.3
122,006 - ECD_00109 0.85 -0.5
122,093 + +0.1
122,098 - +0.5
122,098 - -0.3
122,229 + ECD_00110 0.17 +0.6
122,230 - ECD_00110 0.17 +0.2
122,259 - ECD_00110 0.20 -0.3
122,276 + ECD_00110 0.22 +0.4
122,340 + ECD_00110 0.30 -0.2
122,341 - ECD_00110 0.30 -0.8
122,365 + ECD_00110 0.33 +0.1
122,365 + ECD_00110 0.33 -0.0
122,365 + ECD_00110 0.33 +0.2
122,366 - ECD_00110 0.33 -0.2
122,366 - ECD_00110 0.33 -0.6
122,366 - ECD_00110 0.33 -0.1
122,366 - ECD_00110 0.33 +0.2
122,385 + ECD_00110 0.35 -0.2
122,385 + ECD_00110 0.35 -0.4
122,503 - ECD_00110 0.49 -0.0
122,669 + ECD_00110 0.68 +0.5
122,705 + ECD_00110 0.72 +0.0
122,705 + ECD_00110 0.72 -0.0
122,706 - ECD_00110 0.73 +0.4
122,706 - ECD_00110 0.73 +0.7
122,707 + ECD_00110 0.73 -0.5
122,707 + ECD_00110 0.73 -0.9
122,707 + ECD_00110 0.73 +0.2
122,707 + ECD_00110 0.73 -1.4
122,708 - ECD_00110 0.73 +0.5
122,708 - ECD_00110 0.73 -1.1
122,782 + ECD_00110 0.81 -0.0
122,945 + -0.0
122,962 - +0.4
122,976 - +0.5
123,034 - -0.5
123,037 + +0.5
123,037 + +0.5
123,066 - -0.5
123,153 - ECD_00111 0.12 +0.3
123,244 + ECD_00111 0.19 +1.6
123,244 + ECD_00111 0.19 +0.4
123,302 + ECD_00111 0.23 -0.9
123,302 + ECD_00111 0.23 -0.6
123,303 - ECD_00111 0.23 +0.4
123,303 - ECD_00111 0.23 +0.3
123,303 - ECD_00111 0.23 +0.5
123,307 - ECD_00111 0.24 +0.1
123,351 + ECD_00111 0.27 +0.5
123,356 - ECD_00111 0.27 -0.2
123,429 + ECD_00111 0.32 -0.5
123,444 - ECD_00111 0.34 -0.9
123,446 - ECD_00111 0.34 +0.7
123,446 - ECD_00111 0.34 -0.3
123,458 + ECD_00111 0.35 +0.4
123,458 + ECD_00111 0.35 -0.2
123,459 - ECD_00111 0.35 -0.1
123,482 - ECD_00111 0.36 +0.1
123,611 + ECD_00111 0.46 -0.7
123,612 - ECD_00111 0.46 +0.4
123,629 + ECD_00111 0.47 +0.1
123,630 - ECD_00111 0.47 +0.1
123,730 - ECD_00111 0.54 +0.4
123,833 - ECD_00111 0.62 +0.8
124,007 + ECD_00111 0.75 -0.1
124,008 - ECD_00111 0.75 -0.1
124,012 - ECD_00111 0.75 +0.5
124,235 - -0.0
124,235 - -0.1
124,235 - +0.3
124,291 - -1.0
124,299 + +0.4
124,389 - -0.3
124,708 + +0.6
124,728 - +0.3
124,731 + -0.5
124,749 + +0.0
124,750 - +0.5
124,751 + -0.6
124,883 + -0.5
124,903 + -0.6
124,903 + -0.4
125,188 + ECD_00112 0.38 -0.4
125,188 + ECD_00112 0.38 -0.5
125,188 + ECD_00112 0.38 -1.0
125,223 + ECD_00112 0.43 -0.7
125,233 + ECD_00112 0.44 -0.9
125,236 + ECD_00112 0.44 -0.6

Or see this region's nucleotide sequence