Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00081 and ECD_00082 are separated by 601 nucleotides ECD_00082 and ECD_00083 are separated by 1 nucleotides ECD_00083 and ECD_00084 overlap by 4 nucleotides
ECD_00081: ECD_00081 - transcriptional repressor-activator for carbon metabolism, at 90,833 to 91,837
_00081
ECD_00082: ECD_00082 - RsmH methytransferase inhibitor, at 92,439 to 92,897
_00082
ECD_00083: ECD_00083 - 16S rRNA m(4)C1402 methyltransferase, SAM-dependent, at 92,899 to 93,840
_00083
ECD_00084: ECD_00084 - membrane bound cell division leucine zipper septum protein, at 93,837 to 94,202
_00084
Position (kb)
92
93 Strain fitness (log2 ratio)
-1
0
1 at 91.478 kb on + strand, within ECD_00081 at 91.490 kb on + strand, within ECD_00081 at 91.490 kb on + strand, within ECD_00081 at 91.677 kb on + strand, within ECD_00081 at 91.677 kb on + strand, within ECD_00081 at 91.795 kb on + strand at 91.801 kb on + strand at 91.832 kb on - strand at 91.832 kb on - strand at 91.836 kb on - strand at 91.852 kb on + strand at 91.936 kb on + strand at 91.937 kb on - strand at 91.940 kb on - strand at 91.940 kb on - strand at 91.946 kb on - strand at 92.000 kb on + strand at 92.000 kb on + strand at 92.000 kb on + strand at 92.035 kb on + strand at 92.147 kb on + strand at 92.147 kb on + strand at 92.148 kb on - strand at 92.148 kb on - strand at 92.187 kb on - strand at 92.188 kb on + strand at 92.204 kb on + strand at 92.255 kb on + strand at 92.267 kb on + strand at 92.422 kb on + strand at 92.671 kb on + strand, within ECD_00082 at 92.671 kb on + strand, within ECD_00082 at 92.895 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 91,478 + ECD_00081 0.64 -1.3 91,490 + ECD_00081 0.65 -1.4 91,490 + ECD_00081 0.65 -1.4 91,677 + ECD_00081 0.84 -0.6 91,677 + ECD_00081 0.84 -0.6 91,795 + -0.0 91,801 + -1.7 91,832 - +0.7 91,832 - -0.5 91,836 - +0.9 91,852 + -0.1 91,936 + -0.0 91,937 - +0.2 91,940 - +0.5 91,940 - +0.5 91,946 - +0.0 92,000 + -0.2 92,000 + +0.2 92,000 + +0.0 92,035 + +0.5 92,147 + +0.7 92,147 + -0.5 92,148 - +0.2 92,148 - -0.0 92,187 - +0.1 92,188 + -0.6 92,204 + -0.5 92,255 + -0.2 92,267 + +0.6 92,422 + -0.3 92,671 + ECD_00082 0.51 -1.2 92,671 + ECD_00082 0.51 -0.4 92,895 + +0.7
Or see this region's nucleotide sequence