Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00079 and ECD_00080 are separated by 2 nucleotides ECD_00080 and ECD_00081 are separated by 179 nucleotides ECD_00081 and ECD_00082 are separated by 601 nucleotides
ECD_00079: ECD_00079 - acetolactate synthase 3 large subunit, at 88,435 to 90,159
_00079
ECD_00080: ECD_00080 - acetolactate synthase 3, small subunit, valine-sensitive, at 90,162 to 90,653
_00080
ECD_00081: ECD_00081 - transcriptional repressor-activator for carbon metabolism, at 90,833 to 91,837
_00081
ECD_00082: ECD_00082 - RsmH methytransferase inhibitor, at 92,439 to 92,897
_00082
Position (kb) 90
91
92 Strain fitness (log2 ratio) -2
-1
0
1 at 89.900 kb on - strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.923 kb on + strand, within ECD_00079 at 89.924 kb on - strand, within ECD_00079 at 89.924 kb on - strand, within ECD_00079 at 89.924 kb on - strand, within ECD_00079 at 89.925 kb on + strand, within ECD_00079 at 89.925 kb on + strand, within ECD_00079 at 89.925 kb on + strand, within ECD_00079 at 89.926 kb on - strand, within ECD_00079 at 89.926 kb on - strand, within ECD_00079 at 89.926 kb on - strand, within ECD_00079 at 89.966 kb on - strand, within ECD_00079 at 89.966 kb on - strand, within ECD_00079 at 90.019 kb on - strand at 90.046 kb on - strand at 90.095 kb on - strand at 90.162 kb on - strand at 90.184 kb on + strand at 90.296 kb on + strand, within ECD_00080 at 90.328 kb on + strand, within ECD_00080 at 90.352 kb on + strand, within ECD_00080 at 90.471 kb on - strand, within ECD_00080 at 90.473 kb on + strand, within ECD_00080 at 90.497 kb on + strand, within ECD_00080 at 90.497 kb on + strand, within ECD_00080 at 90.522 kb on - strand, within ECD_00080 at 90.532 kb on + strand, within ECD_00080 at 90.764 kb on - strand at 90.770 kb on + strand at 90.817 kb on + strand at 90.887 kb on + strand at 90.888 kb on - strand at 90.888 kb on - strand at 90.888 kb on - strand at 91.021 kb on + strand, within ECD_00081 at 91.058 kb on + strand, within ECD_00081 at 91.058 kb on + strand, within ECD_00081 at 91.058 kb on + strand, within ECD_00081 at 91.076 kb on + strand, within ECD_00081 at 91.077 kb on - strand, within ECD_00081 at 91.232 kb on + strand, within ECD_00081 at 91.232 kb on + strand, within ECD_00081 at 91.353 kb on + strand, within ECD_00081 at 91.358 kb on - strand, within ECD_00081 at 91.358 kb on - strand, within ECD_00081 at 91.382 kb on + strand, within ECD_00081 at 91.478 kb on + strand, within ECD_00081 at 91.490 kb on + strand, within ECD_00081 at 91.490 kb on + strand, within ECD_00081 at 91.677 kb on + strand, within ECD_00081 at 91.677 kb on + strand, within ECD_00081 at 91.795 kb on + strand at 91.801 kb on + strand at 91.832 kb on - strand at 91.832 kb on - strand at 91.836 kb on - strand at 91.852 kb on + strand at 91.936 kb on + strand at 91.937 kb on - strand at 91.940 kb on - strand at 91.940 kb on - strand at 91.946 kb on - strand at 92.000 kb on + strand at 92.000 kb on + strand at 92.000 kb on + strand at 92.035 kb on + strand at 92.147 kb on + strand at 92.147 kb on + strand at 92.148 kb on - strand at 92.148 kb on - strand at 92.187 kb on - strand at 92.188 kb on + strand at 92.204 kb on + strand at 92.255 kb on + strand at 92.267 kb on + strand at 92.422 kb on + strand at 92.671 kb on + strand, within ECD_00082 at 92.671 kb on + strand, within ECD_00082
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 89,900 - ECD_00079 0.85 -0.6 89,923 + ECD_00079 0.86 -0.1 89,923 + ECD_00079 0.86 +0.5 89,923 + ECD_00079 0.86 -0.2 89,923 + ECD_00079 0.86 -0.3 89,923 + ECD_00079 0.86 -0.0 89,923 + ECD_00079 0.86 -0.3 89,923 + ECD_00079 0.86 +0.1 89,923 + ECD_00079 0.86 +0.2 89,924 - ECD_00079 0.86 +0.1 89,924 - ECD_00079 0.86 +0.0 89,924 - ECD_00079 0.86 -0.1 89,925 + ECD_00079 0.86 -0.2 89,925 + ECD_00079 0.86 +0.1 89,925 + ECD_00079 0.86 +0.0 89,926 - ECD_00079 0.86 +0.3 89,926 - ECD_00079 0.86 -0.4 89,926 - ECD_00079 0.86 +0.8 89,966 - ECD_00079 0.89 +0.4 89,966 - ECD_00079 0.89 -0.3 90,019 - -0.2 90,046 - -0.2 90,095 - +0.8 90,162 - +0.1 90,184 + +0.1 90,296 + ECD_00080 0.27 +0.5 90,328 + ECD_00080 0.34 -0.3 90,352 + ECD_00080 0.39 +1.7 90,471 - ECD_00080 0.63 +0.4 90,473 + ECD_00080 0.63 -0.1 90,497 + ECD_00080 0.68 -0.1 90,497 + ECD_00080 0.68 +0.1 90,522 - ECD_00080 0.73 -0.2 90,532 + ECD_00080 0.75 -0.1 90,764 - -0.4 90,770 + -0.3 90,817 + +0.1 90,887 + -2.3 90,888 - -1.1 90,888 - -0.9 90,888 - -0.2 91,021 + ECD_00081 0.19 +0.2 91,058 + ECD_00081 0.22 -1.0 91,058 + ECD_00081 0.22 -0.9 91,058 + ECD_00081 0.22 -1.0 91,076 + ECD_00081 0.24 -0.4 91,077 - ECD_00081 0.24 -0.6 91,232 + ECD_00081 0.40 -1.1 91,232 + ECD_00081 0.40 -1.1 91,353 + ECD_00081 0.52 -1.6 91,358 - ECD_00081 0.52 -1.4 91,358 - ECD_00081 0.52 -1.0 91,382 + ECD_00081 0.55 -0.4 91,478 + ECD_00081 0.64 -1.3 91,490 + ECD_00081 0.65 -1.4 91,490 + ECD_00081 0.65 -1.4 91,677 + ECD_00081 0.84 -0.6 91,677 + ECD_00081 0.84 -0.6 91,795 + -0.0 91,801 + -1.7 91,832 - +0.7 91,832 - -0.5 91,836 - +0.9 91,852 + -0.1 91,936 + -0.0 91,937 - +0.2 91,940 - +0.5 91,940 - +0.5 91,946 - +0.0 92,000 + -0.2 92,000 + +0.2 92,000 + +0.0 92,035 + +0.5 92,147 + +0.7 92,147 + -0.5 92,148 - +0.2 92,148 - -0.0 92,187 - +0.1 92,188 + -0.6 92,204 + -0.5 92,255 + -0.2 92,267 + +0.6 92,422 + -0.3 92,671 + ECD_00082 0.51 -1.2 92,671 + ECD_00082 0.51 -0.4
Or see this region's nucleotide sequence