Strain Fitness in Escherichia coli BL21 around ECD_00080

Experiment: Mixed culture, Halobacteriovorax-10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00079 and ECD_00080 are separated by 2 nucleotidesECD_00080 and ECD_00081 are separated by 179 nucleotides ECD_00079: ECD_00079 - acetolactate synthase 3 large subunit, at 88,435 to 90,159 _00079 ECD_00080: ECD_00080 - acetolactate synthase 3, small subunit, valine-sensitive, at 90,162 to 90,653 _00080 ECD_00081: ECD_00081 - transcriptional repressor-activator for carbon metabolism, at 90,833 to 91,837 _00081 Position (kb) 90 91Strain fitness (log2 ratio) -2 -1 0 1at 89.224 kb on + strand, within ECD_00079at 89.224 kb on + strand, within ECD_00079at 89.225 kb on - strand, within ECD_00079at 89.236 kb on - strand, within ECD_00079at 89.314 kb on + strand, within ECD_00079at 89.315 kb on - strand, within ECD_00079at 89.355 kb on + strand, within ECD_00079at 89.367 kb on + strand, within ECD_00079at 89.528 kb on - strand, within ECD_00079at 89.602 kb on + strand, within ECD_00079at 89.602 kb on + strand, within ECD_00079at 89.603 kb on - strand, within ECD_00079at 89.647 kb on + strand, within ECD_00079at 89.714 kb on + strand, within ECD_00079at 89.785 kb on - strand, within ECD_00079at 89.785 kb on - strand, within ECD_00079at 89.900 kb on - strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.923 kb on + strand, within ECD_00079at 89.924 kb on - strand, within ECD_00079at 89.924 kb on - strand, within ECD_00079at 89.924 kb on - strand, within ECD_00079at 89.925 kb on + strand, within ECD_00079at 89.925 kb on + strand, within ECD_00079at 89.925 kb on + strand, within ECD_00079at 89.926 kb on - strand, within ECD_00079at 89.926 kb on - strand, within ECD_00079at 89.926 kb on - strand, within ECD_00079at 89.966 kb on - strand, within ECD_00079at 89.966 kb on - strand, within ECD_00079at 90.019 kb on - strandat 90.046 kb on - strandat 90.095 kb on - strandat 90.162 kb on - strandat 90.184 kb on + strandat 90.296 kb on + strand, within ECD_00080at 90.328 kb on + strand, within ECD_00080at 90.352 kb on + strand, within ECD_00080at 90.471 kb on - strand, within ECD_00080at 90.473 kb on + strand, within ECD_00080at 90.497 kb on + strand, within ECD_00080at 90.497 kb on + strand, within ECD_00080at 90.522 kb on - strand, within ECD_00080at 90.532 kb on + strand, within ECD_00080at 90.764 kb on - strandat 90.770 kb on + strandat 90.817 kb on + strandat 90.887 kb on + strandat 90.888 kb on - strandat 90.888 kb on - strandat 90.888 kb on - strandat 91.021 kb on + strand, within ECD_00081at 91.058 kb on + strand, within ECD_00081at 91.058 kb on + strand, within ECD_00081at 91.058 kb on + strand, within ECD_00081at 91.076 kb on + strand, within ECD_00081at 91.077 kb on - strand, within ECD_00081at 91.232 kb on + strand, within ECD_00081at 91.232 kb on + strand, within ECD_00081at 91.353 kb on + strand, within ECD_00081at 91.358 kb on - strand, within ECD_00081at 91.358 kb on - strand, within ECD_00081at 91.382 kb on + strand, within ECD_00081at 91.478 kb on + strand, within ECD_00081at 91.490 kb on + strand, within ECD_00081at 91.490 kb on + strand, within ECD_00081

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10
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89,224 + ECD_00079 0.46 +0.1
89,224 + ECD_00079 0.46 -0.6
89,225 - ECD_00079 0.46 +0.4
89,236 - ECD_00079 0.46 +0.2
89,314 + ECD_00079 0.51 -0.1
89,315 - ECD_00079 0.51 -0.0
89,355 + ECD_00079 0.53 +0.3
89,367 + ECD_00079 0.54 +0.0
89,528 - ECD_00079 0.63 +0.1
89,602 + ECD_00079 0.68 +0.2
89,602 + ECD_00079 0.68 -1.3
89,603 - ECD_00079 0.68 -0.5
89,647 + ECD_00079 0.70 +0.1
89,714 + ECD_00079 0.74 -0.2
89,785 - ECD_00079 0.78 -0.2
89,785 - ECD_00079 0.78 +0.3
89,900 - ECD_00079 0.85 -0.6
89,923 + ECD_00079 0.86 -0.1
89,923 + ECD_00079 0.86 +0.5
89,923 + ECD_00079 0.86 -0.2
89,923 + ECD_00079 0.86 -0.3
89,923 + ECD_00079 0.86 -0.0
89,923 + ECD_00079 0.86 -0.3
89,923 + ECD_00079 0.86 +0.1
89,923 + ECD_00079 0.86 +0.2
89,924 - ECD_00079 0.86 +0.1
89,924 - ECD_00079 0.86 +0.0
89,924 - ECD_00079 0.86 -0.1
89,925 + ECD_00079 0.86 -0.2
89,925 + ECD_00079 0.86 +0.1
89,925 + ECD_00079 0.86 +0.0
89,926 - ECD_00079 0.86 +0.3
89,926 - ECD_00079 0.86 -0.4
89,926 - ECD_00079 0.86 +0.8
89,966 - ECD_00079 0.89 +0.4
89,966 - ECD_00079 0.89 -0.3
90,019 - -0.2
90,046 - -0.2
90,095 - +0.8
90,162 - +0.1
90,184 + +0.1
90,296 + ECD_00080 0.27 +0.5
90,328 + ECD_00080 0.34 -0.3
90,352 + ECD_00080 0.39 +1.7
90,471 - ECD_00080 0.63 +0.4
90,473 + ECD_00080 0.63 -0.1
90,497 + ECD_00080 0.68 -0.1
90,497 + ECD_00080 0.68 +0.1
90,522 - ECD_00080 0.73 -0.2
90,532 + ECD_00080 0.75 -0.1
90,764 - -0.4
90,770 + -0.3
90,817 + +0.1
90,887 + -2.3
90,888 - -1.1
90,888 - -0.9
90,888 - -0.2
91,021 + ECD_00081 0.19 +0.2
91,058 + ECD_00081 0.22 -1.0
91,058 + ECD_00081 0.22 -0.9
91,058 + ECD_00081 0.22 -1.0
91,076 + ECD_00081 0.24 -0.4
91,077 - ECD_00081 0.24 -0.6
91,232 + ECD_00081 0.40 -1.1
91,232 + ECD_00081 0.40 -1.1
91,353 + ECD_00081 0.52 -1.6
91,358 - ECD_00081 0.52 -1.4
91,358 - ECD_00081 0.52 -1.0
91,382 + ECD_00081 0.55 -0.4
91,478 + ECD_00081 0.64 -1.3
91,490 + ECD_00081 0.65 -1.4
91,490 + ECD_00081 0.65 -1.4

Or see this region's nucleotide sequence