Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00036 and ECD_00037 are separated by 17 nucleotides ECD_00037 and ECD_00038 are separated by 261 nucleotides ECD_00038 and ECD_00039 are separated by 208 nucleotides
ECD_00036: ECD_00036 - carbamoyl phosphate synthetase small subunit, glutamine amidotransferase, at 33,723 to 34,871
_00036
ECD_00037: ECD_00037 - carbamoyl-phosphate synthase large subunit, at 34,889 to 38,110
_00037
ECD_00038: ECD_00038 - cai operon transcriptional activator, at 38,372 to 38,767
_00038
ECD_00039: ECD_00039 - stimulator of CaiD and CaiB enzyme activities, at 38,976 to 39,566
_00039
Position (kb) 34
35
36
37
38
39 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 33.891 kb on + strand, within ECD_00036 at 33.891 kb on + strand, within ECD_00036 at 33.892 kb on - strand, within ECD_00036 at 33.946 kb on + strand, within ECD_00036 at 34.004 kb on + strand, within ECD_00036 at 34.038 kb on - strand, within ECD_00036 at 34.224 kb on + strand, within ECD_00036 at 34.226 kb on + strand, within ECD_00036 at 34.685 kb on - strand, within ECD_00036 at 34.710 kb on - strand, within ECD_00036 at 34.710 kb on - strand, within ECD_00036 at 34.857 kb on - strand at 34.869 kb on + strand at 34.879 kb on + strand at 34.900 kb on + strand at 34.901 kb on - strand at 34.906 kb on + strand at 34.909 kb on - strand at 34.915 kb on + strand at 34.970 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.991 kb on - strand at 35.081 kb on + strand at 35.082 kb on - strand at 35.082 kb on - strand at 35.106 kb on + strand at 35.107 kb on - strand at 35.230 kb on + strand, within ECD_00037 at 35.404 kb on + strand, within ECD_00037 at 35.436 kb on - strand, within ECD_00037 at 35.669 kb on + strand, within ECD_00037 at 35.948 kb on + strand, within ECD_00037 at 35.949 kb on - strand, within ECD_00037 at 35.949 kb on - strand, within ECD_00037 at 35.949 kb on - strand, within ECD_00037 at 36.193 kb on + strand, within ECD_00037 at 36.194 kb on - strand, within ECD_00037 at 36.200 kb on + strand, within ECD_00037 at 36.200 kb on + strand, within ECD_00037 at 36.200 kb on + strand, within ECD_00037 at 36.446 kb on + strand, within ECD_00037 at 36.447 kb on - strand, within ECD_00037 at 36.447 kb on - strand, within ECD_00037 at 36.465 kb on - strand, within ECD_00037 at 36.466 kb on + strand, within ECD_00037 at 36.467 kb on - strand, within ECD_00037 at 36.512 kb on + strand, within ECD_00037 at 36.512 kb on + strand, within ECD_00037 at 36.513 kb on - strand, within ECD_00037 at 36.513 kb on - strand, within ECD_00037 at 36.513 kb on - strand, within ECD_00037 at 36.519 kb on - strand, within ECD_00037 at 36.519 kb on - strand, within ECD_00037 at 36.519 kb on - strand, within ECD_00037 at 36.527 kb on + strand, within ECD_00037 at 36.679 kb on + strand, within ECD_00037 at 36.716 kb on + strand, within ECD_00037 at 36.716 kb on + strand, within ECD_00037 at 36.812 kb on + strand, within ECD_00037 at 37.029 kb on + strand, within ECD_00037 at 37.097 kb on + strand, within ECD_00037 at 37.167 kb on + strand, within ECD_00037 at 37.290 kb on + strand, within ECD_00037 at 37.290 kb on + strand, within ECD_00037 at 37.291 kb on - strand, within ECD_00037 at 37.291 kb on - strand, within ECD_00037 at 37.432 kb on + strand, within ECD_00037 at 37.433 kb on - strand, within ECD_00037 at 37.525 kb on - strand, within ECD_00037 at 37.547 kb on + strand, within ECD_00037 at 37.582 kb on + strand, within ECD_00037 at 37.903 kb on + strand at 37.903 kb on + strand at 37.919 kb on - strand at 37.919 kb on - strand at 37.922 kb on + strand at 37.922 kb on + strand at 37.923 kb on - strand at 37.923 kb on - strand at 37.923 kb on - strand at 37.923 kb on - strand at 37.923 kb on - strand at 37.994 kb on + strand at 37.995 kb on - strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.996 kb on + strand at 37.997 kb on - strand at 37.997 kb on - strand at 38.109 kb on - strand at 38.237 kb on + strand at 38.237 kb on + strand at 38.237 kb on + strand at 38.278 kb on + strand at 38.279 kb on - strand at 38.338 kb on - strand at 38.349 kb on + strand at 38.371 kb on + strand at 38.500 kb on + strand, within ECD_00038 at 38.510 kb on + strand, within ECD_00038 at 38.510 kb on + strand, within ECD_00038 at 38.511 kb on - strand, within ECD_00038 at 38.511 kb on - strand, within ECD_00038 at 38.512 kb on + strand, within ECD_00038 at 38.548 kb on + strand, within ECD_00038 at 38.560 kb on + strand, within ECD_00038 at 38.561 kb on - strand, within ECD_00038 at 38.647 kb on + strand, within ECD_00038 at 38.648 kb on - strand, within ECD_00038 at 38.755 kb on + strand at 38.755 kb on + strand at 38.756 kb on - strand at 38.756 kb on - strand at 38.922 kb on + strand at 38.958 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 33,891 + ECD_00036 0.15 -2.1 33,891 + ECD_00036 0.15 -1.4 33,892 - ECD_00036 0.15 -1.4 33,946 + ECD_00036 0.19 -0.9 34,004 + ECD_00036 0.24 -1.4 34,038 - ECD_00036 0.27 -1.5 34,224 + ECD_00036 0.44 -0.5 34,226 + ECD_00036 0.44 -1.5 34,685 - ECD_00036 0.84 -1.9 34,710 - ECD_00036 0.86 -1.3 34,710 - ECD_00036 0.86 -0.9 34,857 - -2.4 34,869 + +0.8 34,879 + -0.4 34,900 + -0.6 34,901 - -1.5 34,906 + -1.4 34,909 - -2.6 34,915 + -0.7 34,970 + -0.3 34,990 + -1.2 34,990 + -2.0 34,990 + -1.2 34,990 + -1.0 34,990 + -0.2 34,991 - -1.1 35,081 + -1.4 35,082 - -2.0 35,082 - -1.8 35,106 + -1.2 35,107 - -1.6 35,230 + ECD_00037 0.11 -1.0 35,404 + ECD_00037 0.16 -0.2 35,436 - ECD_00037 0.17 -1.6 35,669 + ECD_00037 0.24 -0.3 35,948 + ECD_00037 0.33 -0.6 35,949 - ECD_00037 0.33 -1.5 35,949 - ECD_00037 0.33 -2.0 35,949 - ECD_00037 0.33 -1.7 36,193 + ECD_00037 0.40 -1.2 36,194 - ECD_00037 0.41 -1.3 36,200 + ECD_00037 0.41 -0.9 36,200 + ECD_00037 0.41 -1.4 36,200 + ECD_00037 0.41 -0.7 36,446 + ECD_00037 0.48 -1.6 36,447 - ECD_00037 0.48 -1.0 36,447 - ECD_00037 0.48 -1.6 36,465 - ECD_00037 0.49 -1.3 36,466 + ECD_00037 0.49 -2.0 36,467 - ECD_00037 0.49 -1.5 36,512 + ECD_00037 0.50 -0.8 36,512 + ECD_00037 0.50 -0.5 36,513 - ECD_00037 0.50 -1.2 36,513 - ECD_00037 0.50 -1.3 36,513 - ECD_00037 0.50 -1.9 36,519 - ECD_00037 0.51 -1.0 36,519 - ECD_00037 0.51 -3.8 36,519 - ECD_00037 0.51 -0.5 36,527 + ECD_00037 0.51 -1.2 36,679 + ECD_00037 0.56 -0.9 36,716 + ECD_00037 0.57 -1.1 36,716 + ECD_00037 0.57 -1.4 36,812 + ECD_00037 0.60 +0.2 37,029 + ECD_00037 0.66 -2.3 37,097 + ECD_00037 0.69 -1.2 37,167 + ECD_00037 0.71 +0.4 37,290 + ECD_00037 0.75 -0.9 37,290 + ECD_00037 0.75 -1.5 37,291 - ECD_00037 0.75 +0.1 37,291 - ECD_00037 0.75 -0.8 37,432 + ECD_00037 0.79 -1.1 37,433 - ECD_00037 0.79 -2.0 37,525 - ECD_00037 0.82 -2.2 37,547 + ECD_00037 0.82 -1.6 37,582 + ECD_00037 0.84 -1.5 37,903 + -1.2 37,903 + -1.2 37,919 - -0.9 37,919 - -0.2 37,922 + -1.4 37,922 + -0.9 37,923 - -0.6 37,923 - -2.4 37,923 - -1.6 37,923 - -1.8 37,923 - -1.4 37,994 + -2.3 37,995 - -3.2 37,996 + -0.9 37,996 + -1.7 37,996 + -1.3 37,996 + -0.9 37,996 + -1.6 37,997 - -0.8 37,997 - -3.6 38,109 - -0.2 38,237 + -0.6 38,237 + +0.4 38,237 + +0.1 38,278 + -0.3 38,279 - +0.1 38,338 - -0.4 38,349 + +0.5 38,371 + +0.2 38,500 + ECD_00038 0.32 +0.3 38,510 + ECD_00038 0.35 +0.2 38,510 + ECD_00038 0.35 -0.1 38,511 - ECD_00038 0.35 -0.2 38,511 - ECD_00038 0.35 -0.9 38,512 + ECD_00038 0.35 +0.7 38,548 + ECD_00038 0.44 -0.4 38,560 + ECD_00038 0.47 -0.2 38,561 - ECD_00038 0.48 -0.6 38,647 + ECD_00038 0.69 -0.5 38,648 - ECD_00038 0.70 -0.0 38,755 + +0.0 38,755 + +0.8 38,756 - -0.6 38,756 - -0.1 38,922 + +0.5 38,958 - +0.1
Or see this region's nucleotide sequence