Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00035 and ECD_00036 are separated by 455 nucleotides ECD_00036 and ECD_00037 are separated by 17 nucleotides
ECD_00035: ECD_00035 - dihydrodipicolinate reductase, at 32,446 to 33,267
_00035
ECD_00036: ECD_00036 - carbamoyl phosphate synthetase small subunit, glutamine amidotransferase, at 33,723 to 34,871
_00036
ECD_00037: ECD_00037 - carbamoyl-phosphate synthase large subunit, at 34,889 to 38,110
_00037
Position (kb) 33
34
35 Strain fitness (log2 ratio) -2
-1
0
1 at 33.864 kb on + strand, within ECD_00036 at 33.864 kb on + strand, within ECD_00036 at 33.881 kb on + strand, within ECD_00036 at 33.887 kb on + strand, within ECD_00036 at 33.887 kb on + strand, within ECD_00036 at 33.887 kb on + strand, within ECD_00036 at 33.887 kb on + strand, within ECD_00036 at 33.888 kb on - strand, within ECD_00036 at 33.888 kb on - strand, within ECD_00036 at 33.891 kb on + strand, within ECD_00036 at 33.891 kb on + strand, within ECD_00036 at 33.892 kb on - strand, within ECD_00036 at 33.946 kb on + strand, within ECD_00036 at 34.004 kb on + strand, within ECD_00036 at 34.038 kb on - strand, within ECD_00036 at 34.224 kb on + strand, within ECD_00036 at 34.226 kb on + strand, within ECD_00036 at 34.685 kb on - strand, within ECD_00036 at 34.710 kb on - strand, within ECD_00036 at 34.710 kb on - strand, within ECD_00036 at 34.857 kb on - strand at 34.869 kb on + strand at 34.879 kb on + strand at 34.900 kb on + strand at 34.901 kb on - strand at 34.906 kb on + strand at 34.909 kb on - strand at 34.915 kb on + strand at 34.970 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.990 kb on + strand at 34.991 kb on - strand at 35.081 kb on + strand at 35.082 kb on - strand at 35.082 kb on - strand at 35.106 kb on + strand at 35.107 kb on - strand at 35.230 kb on + strand, within ECD_00037 at 35.404 kb on + strand, within ECD_00037 at 35.436 kb on - strand, within ECD_00037 at 35.669 kb on + strand, within ECD_00037
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 33,864 + ECD_00036 0.12 -1.0 33,864 + ECD_00036 0.12 -2.0 33,881 + ECD_00036 0.14 -1.0 33,887 + ECD_00036 0.14 -1.0 33,887 + ECD_00036 0.14 -1.6 33,887 + ECD_00036 0.14 -0.8 33,887 + ECD_00036 0.14 -0.6 33,888 - ECD_00036 0.14 -1.0 33,888 - ECD_00036 0.14 -2.3 33,891 + ECD_00036 0.15 -2.1 33,891 + ECD_00036 0.15 -1.4 33,892 - ECD_00036 0.15 -1.4 33,946 + ECD_00036 0.19 -0.9 34,004 + ECD_00036 0.24 -1.4 34,038 - ECD_00036 0.27 -1.5 34,224 + ECD_00036 0.44 -0.5 34,226 + ECD_00036 0.44 -1.5 34,685 - ECD_00036 0.84 -1.9 34,710 - ECD_00036 0.86 -1.3 34,710 - ECD_00036 0.86 -0.9 34,857 - -2.4 34,869 + +0.8 34,879 + -0.4 34,900 + -0.6 34,901 - -1.5 34,906 + -1.4 34,909 - -2.6 34,915 + -0.7 34,970 + -0.3 34,990 + -1.2 34,990 + -2.0 34,990 + -1.2 34,990 + -1.0 34,990 + -0.2 34,991 - -1.1 35,081 + -1.4 35,082 - -2.0 35,082 - -1.8 35,106 + -1.2 35,107 - -1.6 35,230 + ECD_00037 0.11 -1.0 35,404 + ECD_00037 0.16 -0.2 35,436 - ECD_00037 0.17 -1.6 35,669 + ECD_00037 0.24 -0.3
Or see this region's nucleotide sequence