Experiment: Mixed culture, Halobacteriovorax-10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00012 and ECD_00013 are separated by 66 nucleotides ECD_00013 and ECD_00014 are separated by 376 nucleotides ECD_00014 and ECD_00015 are separated by 88 nucleotides
ECD_00011: ECD_00011 - UPF0174 family protein, at 10,641 to 11,354
_00011
ECD_00012: ECD_00012 - hypothetical protein, at 10,828 to 11,313
_00012
ECD_00013: ECD_00013 - UPF0412 family protein, at 11,380 to 11,784
_00013
ECD_00014: ECD_00014 - chaperone Hsp70, with co-chaperone DnaJ, at 12,161 to 14,077
_00014
ECD_00015: ECD_00015 - chaperone Hsp40, DnaK co-chaperone, at 14,166 to 15,296
_00015
Position (kb) 12
13
14
15 Strain fitness (log2 ratio) -2
-1
0
1 at 11.224 kb on - strand at 11.304 kb on - strand at 11.342 kb on - strand at 11.369 kb on - strand at 11.369 kb on - strand at 11.431 kb on - strand, within ECD_00013 at 11.532 kb on + strand, within ECD_00013 at 11.533 kb on - strand, within ECD_00013 at 11.587 kb on + strand, within ECD_00013 at 11.593 kb on + strand, within ECD_00013 at 11.620 kb on + strand, within ECD_00013 at 11.620 kb on + strand, within ECD_00013 at 11.707 kb on - strand, within ECD_00013 at 11.707 kb on - strand, within ECD_00013 at 11.707 kb on - strand, within ECD_00013 at 11.880 kb on + strand at 12.038 kb on + strand at 12.038 kb on + strand at 12.039 kb on - strand at 12.039 kb on - strand at 12.042 kb on - strand at 12.109 kb on + strand at 12.112 kb on + strand at 12.112 kb on + strand at 12.112 kb on + strand at 12.143 kb on + strand at 12.143 kb on + strand at 12.143 kb on + strand at 12.143 kb on + strand at 12.145 kb on + strand at 12.145 kb on + strand at 12.145 kb on + strand at 12.145 kb on + strand at 12.145 kb on + strand at 12.405 kb on + strand, within ECD_00014 at 12.598 kb on + strand, within ECD_00014 at 12.724 kb on + strand, within ECD_00014 at 13.003 kb on + strand, within ECD_00014 at 13.246 kb on + strand, within ECD_00014 at 13.272 kb on + strand, within ECD_00014 at 13.326 kb on + strand, within ECD_00014 at 13.326 kb on + strand, within ECD_00014 at 13.758 kb on + strand, within ECD_00014 at 14.084 kb on + strand at 14.084 kb on + strand at 14.086 kb on + strand at 14.086 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.098 kb on + strand at 14.100 kb on + strand at 14.100 kb on + strand at 14.171 kb on + strand at 14.184 kb on + strand at 14.259 kb on + strand at 14.306 kb on + strand, within ECD_00015 at 14.325 kb on + strand, within ECD_00015 at 14.325 kb on + strand, within ECD_00015 at 14.325 kb on + strand, within ECD_00015 at 14.361 kb on + strand, within ECD_00015 at 14.362 kb on - strand, within ECD_00015 at 14.370 kb on + strand, within ECD_00015 at 14.399 kb on + strand, within ECD_00015 at 14.520 kb on + strand, within ECD_00015 at 14.956 kb on - strand, within ECD_00015
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-10 remove 11,224 - +0.0 11,304 - -0.4 11,342 - +0.2 11,369 - -0.3 11,369 - -0.3 11,431 - ECD_00013 0.13 -1.2 11,532 + ECD_00013 0.38 +0.1 11,533 - ECD_00013 0.38 -0.5 11,587 + ECD_00013 0.51 +0.3 11,593 + ECD_00013 0.53 -0.0 11,620 + ECD_00013 0.59 -0.3 11,620 + ECD_00013 0.59 +0.2 11,707 - ECD_00013 0.81 -0.4 11,707 - ECD_00013 0.81 -0.4 11,707 - ECD_00013 0.81 +0.7 11,880 + -0.3 12,038 + +0.4 12,038 + -0.1 12,039 - -0.2 12,039 - +0.9 12,042 - -1.0 12,109 + -0.0 12,112 + -0.1 12,112 + +0.0 12,112 + +0.2 12,143 + -0.4 12,143 + -1.0 12,143 + -0.7 12,143 + -1.6 12,145 + -2.1 12,145 + -1.4 12,145 + -1.6 12,145 + +0.1 12,145 + +0.4 12,405 + ECD_00014 0.13 -0.0 12,598 + ECD_00014 0.23 -1.6 12,724 + ECD_00014 0.29 +1.4 13,003 + ECD_00014 0.44 -2.2 13,246 + ECD_00014 0.57 -1.8 13,272 + ECD_00014 0.58 -1.0 13,326 + ECD_00014 0.61 -1.2 13,326 + ECD_00014 0.61 -0.2 13,758 + ECD_00014 0.83 -0.3 14,084 + -0.2 14,084 + +0.1 14,086 + +0.0 14,086 + +0.1 14,098 + +0.4 14,098 + +0.1 14,098 + -0.0 14,098 + -0.1 14,098 + -0.1 14,100 + +0.2 14,100 + +0.2 14,171 + -0.9 14,184 + -1.1 14,259 + -0.6 14,306 + ECD_00015 0.12 -0.7 14,325 + ECD_00015 0.14 -1.1 14,325 + ECD_00015 0.14 -1.2 14,325 + ECD_00015 0.14 -0.7 14,361 + ECD_00015 0.17 -0.6 14,362 - ECD_00015 0.17 -1.0 14,370 + ECD_00015 0.18 -0.1 14,399 + ECD_00015 0.21 -1.3 14,520 + ECD_00015 0.31 -0.3 14,956 - ECD_00015 0.70 -0.3
Or see this region's nucleotide sequence