Strain Fitness in Agrobacterium fabrum C58 around Atu1699

Experiment: R2A with rubidium chloride 600 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu1697 and Atu1698 overlap by 4 nucleotidesAtu1698 and Atu1699 overlap by 4 nucleotidesAtu1699 and Atu1700 are separated by 96 nucleotides Atu1697: Atu1697 - MFS permease, at 1,682,347 to 1,683,546 Atu1697 Atu1698: Atu1698 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 1,683,543 to 1,684,199 Atu1698 Atu1699: Atu1699 - molybdopterin-guanine dinucleotide biosynthesis protein B, at 1,684,196 to 1,684,711 Atu1699 Atu1700: Atu1700 - lipoprotein, at 1,684,808 to 1,686,421 Atu1700 Position (kb) 1684 1685Strain fitness (log2 ratio) -2 -1 0 1at 1683.210 kb on - strand, within Atu1697at 1683.371 kb on + strand, within Atu1697at 1683.431 kb on + strandat 1683.545 kb on + strandat 1683.695 kb on + strand, within Atu1698at 1683.703 kb on - strand, within Atu1698at 1683.751 kb on - strand, within Atu1698at 1683.968 kb on + strand, within Atu1698at 1683.976 kb on - strand, within Atu1698at 1684.020 kb on - strand, within Atu1698at 1684.120 kb on + strand, within Atu1698at 1684.128 kb on - strand, within Atu1698at 1684.128 kb on - strand, within Atu1698at 1684.298 kb on - strand, within Atu1699at 1684.350 kb on - strand, within Atu1699at 1684.568 kb on - strand, within Atu1699at 1684.784 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with rubidium chloride 600 mM
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1,683,210 - Atu1697 0.72 -0.0
1,683,371 + Atu1697 0.85 -0.4
1,683,431 + +0.4
1,683,545 + -0.2
1,683,695 + Atu1698 0.23 -0.1
1,683,703 - Atu1698 0.24 +0.1
1,683,751 - Atu1698 0.32 +0.3
1,683,968 + Atu1698 0.65 -0.3
1,683,976 - Atu1698 0.66 +0.2
1,684,020 - Atu1698 0.73 +0.4
1,684,120 + Atu1698 0.88 -1.1
1,684,128 - Atu1698 0.89 +0.0
1,684,128 - Atu1698 0.89 -0.3
1,684,298 - Atu1699 0.20 -1.3
1,684,350 - Atu1699 0.30 -2.3
1,684,568 - Atu1699 0.72 +0.1
1,684,784 + -0.8

Or see this region's nucleotide sequence