Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4786

Experiment: LB_plus_SM_buffer with Ffm_phage 0.1875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4784 and GFF4785 are separated by 170 nucleotidesGFF4785 and GFF4786 overlap by 1 nucleotidesGFF4786 and GFF4787 are separated by 10 nucleotidesGFF4787 and GFF4788 are separated by 44 nucleotides GFF4784 - Transcriptional regulator, MarR family, at 92,390 to 92,794 GFF4784 GFF4785 - 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX (EC 4.1.1.-), at 92,965 to 93,558 GFF4785 GFF4786 - UbiD family decarboxylase, MJ1133 type, at 93,558 to 94,985 GFF4786 GFF4787 - Hydroxyaromatic non-oxidative decarboxylase protein D (EC 4.1.1.-), at 94,996 to 95,232 GFF4787 GFF4788 - RNA polymerase sigma factor RpoS, at 95,277 to 96,269 GFF4788 Position (kb) 93 94 95Strain fitness (log2 ratio) -1 0 1 2at 92.787 kb on - strandat 92.827 kb on + strandat 92.850 kb on - strandat 92.942 kb on - strandat 93.143 kb on - strand, within GFF4785at 93.143 kb on - strand, within GFF4785at 93.210 kb on + strand, within GFF4785at 93.210 kb on + strand, within GFF4785at 93.211 kb on - strand, within GFF4785at 93.211 kb on - strand, within GFF4785at 93.211 kb on - strand, within GFF4785at 93.225 kb on + strand, within GFF4785at 93.225 kb on + strand, within GFF4785at 93.226 kb on - strand, within GFF4785at 93.444 kb on + strand, within GFF4785at 93.495 kb on + strand, within GFF4785at 93.495 kb on + strand, within GFF4785at 93.729 kb on - strand, within GFF4786at 93.729 kb on - strand, within GFF4786at 93.753 kb on - strand, within GFF4786at 93.899 kb on + strand, within GFF4786at 93.975 kb on + strand, within GFF4786at 93.976 kb on - strand, within GFF4786at 94.051 kb on - strand, within GFF4786at 94.076 kb on + strand, within GFF4786at 94.076 kb on + strand, within GFF4786at 94.191 kb on - strand, within GFF4786at 94.271 kb on + strand, within GFF4786at 94.350 kb on - strand, within GFF4786at 94.584 kb on + strand, within GFF4786at 94.584 kb on + strand, within GFF4786at 94.585 kb on - strand, within GFF4786at 94.585 kb on - strand, within GFF4786at 94.795 kb on + strand, within GFF4786at 94.795 kb on + strand, within GFF4786at 94.905 kb on + strandat 94.906 kb on - strandat 94.980 kb on - strandat 95.026 kb on - strand, within GFF4787at 95.069 kb on + strand, within GFF4787at 95.069 kb on + strand, within GFF4787at 95.070 kb on - strand, within GFF4787at 95.070 kb on - strand, within GFF4787at 95.071 kb on + strand, within GFF4787at 95.093 kb on - strand, within GFF4787at 95.095 kb on - strand, within GFF4787at 95.095 kb on - strand, within GFF4787at 95.095 kb on - strand, within GFF4787at 95.275 kb on - strandat 95.605 kb on - strand, within GFF4788at 95.637 kb on - strand, within GFF4788at 95.637 kb on - strand, within GFF4788at 95.709 kb on - strand, within GFF4788at 95.740 kb on - strand, within GFF4788at 95.740 kb on - strand, within GFF4788at 95.740 kb on - strand, within GFF4788at 95.837 kb on - strand, within GFF4788

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.1875 MOI
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92,787 - -0.4
92,827 + +1.0
92,850 - -0.7
92,942 - +0.2
93,143 - GFF4785 0.30 +0.6
93,143 - GFF4785 0.30 +0.1
93,210 + GFF4785 0.41 +0.9
93,210 + GFF4785 0.41 +0.8
93,211 - GFF4785 0.41 -0.6
93,211 - GFF4785 0.41 +0.6
93,211 - GFF4785 0.41 -0.2
93,225 + GFF4785 0.44 -0.4
93,225 + GFF4785 0.44 +0.3
93,226 - GFF4785 0.44 +0.1
93,444 + GFF4785 0.81 +0.2
93,495 + GFF4785 0.89 -0.5
93,495 + GFF4785 0.89 +0.6
93,729 - GFF4786 0.12 -0.1
93,729 - GFF4786 0.12 +0.1
93,753 - GFF4786 0.14 +0.7
93,899 + GFF4786 0.24 +0.2
93,975 + GFF4786 0.29 -0.1
93,976 - GFF4786 0.29 -1.0
94,051 - GFF4786 0.35 -1.2
94,076 + GFF4786 0.36 -0.2
94,076 + GFF4786 0.36 +0.2
94,191 - GFF4786 0.44 -0.2
94,271 + GFF4786 0.50 -0.7
94,350 - GFF4786 0.55 -0.1
94,584 + GFF4786 0.72 -0.1
94,584 + GFF4786 0.72 +0.2
94,585 - GFF4786 0.72 -0.9
94,585 - GFF4786 0.72 +0.1
94,795 + GFF4786 0.87 +0.2
94,795 + GFF4786 0.87 +0.6
94,905 + +1.0
94,906 - +0.2
94,980 - -0.0
95,026 - GFF4787 0.13 -0.4
95,069 + GFF4787 0.31 +0.7
95,069 + GFF4787 0.31 -0.3
95,070 - GFF4787 0.31 +0.0
95,070 - GFF4787 0.31 -0.2
95,071 + GFF4787 0.32 +0.0
95,093 - GFF4787 0.41 -0.3
95,095 - GFF4787 0.42 -0.9
95,095 - GFF4787 0.42 +0.5
95,095 - GFF4787 0.42 -0.5
95,275 - +0.6
95,605 - GFF4788 0.33 +2.0
95,637 - GFF4788 0.36 +0.7
95,637 - GFF4788 0.36 +0.9
95,709 - GFF4788 0.44 +1.3
95,740 - GFF4788 0.47 -0.7
95,740 - GFF4788 0.47 +0.8
95,740 - GFF4788 0.47 +0.7
95,837 - GFF4788 0.56 +1.3

Or see this region's nucleotide sequence