Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4452

Experiment: LB_plus_SM_buffer with Ffm_phage 0.1875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4451 and GFF4452 are separated by 14 nucleotidesGFF4452 and GFF4453 are separated by 9 nucleotidesGFF4453 and GFF4454 are separated by 45 nucleotides GFF4451 - Outer membrane usher protein SfmD, at 236,262 to 238,874 GFF4451 GFF4452 - Fimbriae-like adhesin SfmH, at 238,889 to 239,896 GFF4452 GFF4453 - Fimbriae-like periplasmic protein SfmF, at 239,906 to 240,424 GFF4453 GFF4454 - Transcriptional regulator of fimbriae expression FimZ (LuxR/UhpA family), at 240,470 to 241,102 GFF4454 Position (kb) 238 239 240Strain fitness (log2 ratio) -3 -2 -1 0 1at 237.893 kb on + strand, within GFF4451at 237.908 kb on + strand, within GFF4451at 237.915 kb on + strand, within GFF4451at 237.949 kb on + strand, within GFF4451at 238.022 kb on + strand, within GFF4451at 238.023 kb on - strand, within GFF4451at 238.073 kb on + strand, within GFF4451at 238.085 kb on + strand, within GFF4451at 238.086 kb on - strand, within GFF4451at 238.086 kb on - strand, within GFF4451at 238.089 kb on + strand, within GFF4451at 238.131 kb on - strand, within GFF4451at 238.173 kb on - strand, within GFF4451at 238.203 kb on - strand, within GFF4451at 238.208 kb on + strand, within GFF4451at 238.218 kb on + strand, within GFF4451at 238.220 kb on + strand, within GFF4451at 238.221 kb on - strand, within GFF4451at 238.221 kb on - strand, within GFF4451at 238.255 kb on - strand, within GFF4451at 238.282 kb on - strand, within GFF4451at 238.282 kb on - strand, within GFF4451at 238.305 kb on - strand, within GFF4451at 238.305 kb on - strand, within GFF4451at 238.346 kb on + strand, within GFF4451at 238.481 kb on - strand, within GFF4451at 238.490 kb on + strand, within GFF4451at 238.508 kb on + strand, within GFF4451at 238.509 kb on - strand, within GFF4451at 238.606 kb on + strand, within GFF4451at 238.698 kb on - strandat 238.800 kb on + strandat 239.133 kb on - strand, within GFF4452at 239.133 kb on - strand, within GFF4452at 239.136 kb on + strand, within GFF4452at 239.177 kb on + strand, within GFF4452at 239.195 kb on + strand, within GFF4452at 239.239 kb on - strand, within GFF4452at 239.258 kb on + strand, within GFF4452at 239.281 kb on + strand, within GFF4452at 239.362 kb on + strand, within GFF4452at 239.399 kb on + strand, within GFF4452at 239.400 kb on - strand, within GFF4452at 239.440 kb on - strand, within GFF4452at 239.441 kb on + strand, within GFF4452at 239.450 kb on - strand, within GFF4452at 239.541 kb on + strand, within GFF4452at 239.605 kb on + strand, within GFF4452at 239.614 kb on + strand, within GFF4452at 239.720 kb on - strand, within GFF4452at 239.722 kb on + strand, within GFF4452at 239.806 kb on + strandat 240.167 kb on - strand, within GFF4453at 240.167 kb on - strand, within GFF4453at 240.351 kb on - strand, within GFF4453at 240.353 kb on - strand, within GFF4453at 240.422 kb on + strandat 240.423 kb on - strandat 240.471 kb on + strandat 240.539 kb on + strand, within GFF4454

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.1875 MOI
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237,893 + GFF4451 0.62 -0.4
237,908 + GFF4451 0.63 -0.1
237,915 + GFF4451 0.63 -0.3
237,949 + GFF4451 0.65 -0.5
238,022 + GFF4451 0.67 +0.8
238,023 - GFF4451 0.67 -0.4
238,073 + GFF4451 0.69 +0.1
238,085 + GFF4451 0.70 -0.7
238,086 - GFF4451 0.70 -0.2
238,086 - GFF4451 0.70 +0.1
238,089 + GFF4451 0.70 -0.0
238,131 - GFF4451 0.72 -0.0
238,173 - GFF4451 0.73 +0.8
238,203 - GFF4451 0.74 +0.6
238,208 + GFF4451 0.74 +0.1
238,218 + GFF4451 0.75 +0.2
238,220 + GFF4451 0.75 +1.1
238,221 - GFF4451 0.75 +0.8
238,221 - GFF4451 0.75 +0.9
238,255 - GFF4451 0.76 -0.2
238,282 - GFF4451 0.77 -1.2
238,282 - GFF4451 0.77 -0.7
238,305 - GFF4451 0.78 -0.9
238,305 - GFF4451 0.78 -0.3
238,346 + GFF4451 0.80 -0.5
238,481 - GFF4451 0.85 -0.4
238,490 + GFF4451 0.85 -0.5
238,508 + GFF4451 0.86 -0.4
238,509 - GFF4451 0.86 +0.2
238,606 + GFF4451 0.90 +0.0
238,698 - -0.0
238,800 + -0.0
239,133 - GFF4452 0.24 -0.9
239,133 - GFF4452 0.24 +0.2
239,136 + GFF4452 0.25 -0.4
239,177 + GFF4452 0.29 -1.1
239,195 + GFF4452 0.30 -0.1
239,239 - GFF4452 0.35 -1.2
239,258 + GFF4452 0.37 -1.0
239,281 + GFF4452 0.39 -0.8
239,362 + GFF4452 0.47 +0.1
239,399 + GFF4452 0.51 -1.0
239,400 - GFF4452 0.51 -0.8
239,440 - GFF4452 0.55 -0.8
239,441 + GFF4452 0.55 -0.0
239,450 - GFF4452 0.56 +0.3
239,541 + GFF4452 0.65 -3.4
239,605 + GFF4452 0.71 +1.1
239,614 + GFF4452 0.72 +0.2
239,720 - GFF4452 0.82 +0.5
239,722 + GFF4452 0.83 +0.6
239,806 + -0.1
240,167 - GFF4453 0.50 -0.6
240,167 - GFF4453 0.50 +0.6
240,351 - GFF4453 0.86 -0.4
240,353 - GFF4453 0.86 -0.5
240,422 + +0.6
240,423 - -0.3
240,471 + +0.2
240,539 + GFF4454 0.11 -0.2

Or see this region's nucleotide sequence