Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4125

Experiment: LB_plus_SM_buffer with Ffm_phage 0.1875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4123 and GFF4124 are separated by 221 nucleotidesGFF4124 and GFF4125 are separated by 96 nucleotidesGFF4125 and GFF4126 are separated by 928 nucleotides GFF4123 - Mobile element protein, at 3,857 to 4,123 GFF4123 GFF4124 - Mobile element protein, at 4,345 to 4,737 GFF4124 GFF4125 - Mobile element protein, at 4,834 to 4,968 GFF4125 GFF4126 - FIG01047407: hypothetical protein, at 5,897 to 6,055 GFF4126 Position (kb) 4 5Strain fitness (log2 ratio) -1 0 1at 3.972 kb on - strand, within GFF4123at 4.652 kb on + strand, within GFF4124at 4.653 kb on - strand, within GFF4124at 4.786 kb on + strandat 4.867 kb on + strand, within GFF4125at 4.966 kb on + strandat 4.984 kb on - strandat 5.081 kb on - strandat 5.271 kb on - strandat 5.391 kb on - strandat 5.409 kb on + strandat 5.450 kb on + strandat 5.526 kb on + strandat 5.538 kb on - strandat 5.538 kb on - strandat 5.567 kb on - strandat 5.567 kb on - strandat 5.744 kb on - strandat 5.768 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.1875 MOI
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3,972 - GFF4123 0.43 +1.0
4,652 + GFF4124 0.78 +0.3
4,653 - GFF4124 0.78 -0.2
4,786 + -0.1
4,867 + GFF4125 0.24 -0.4
4,966 + +0.1
4,984 - +0.3
5,081 - -1.2
5,271 - +0.7
5,391 - -0.1
5,409 + +0.4
5,450 + +0.9
5,526 + +0.1
5,538 - -1.4
5,538 - +0.4
5,567 - +0.5
5,567 - +0.9
5,744 - -0.2
5,768 - +0.4

Or see this region's nucleotide sequence