Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2593

Experiment: LB_plus_SM_buffer with Ffm_phage 0.1875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2592 and GFF2593 are separated by 273 nucleotidesGFF2593 and GFF2594 are separated by 0 nucleotides GFF2592 - secreted effector protein, at 117,799 to 118,749 GFF2592 GFF2593 - FIG00639831: hypothetical protein, at 119,023 to 119,253 GFF2593 GFF2594 - putative collagenase, at 119,254 to 121,218 GFF2594 Position (kb) 119 120Strain fitness (log2 ratio) -1 0 1at 118.422 kb on + strand, within GFF2592at 118.911 kb on + strandat 118.992 kb on + strandat 118.992 kb on + strandat 118.992 kb on + strandat 119.005 kb on + strandat 119.045 kb on + strandat 119.140 kb on - strand, within GFF2593at 119.140 kb on - strand, within GFF2593at 119.455 kb on - strand, within GFF2594at 119.527 kb on + strand, within GFF2594at 119.575 kb on + strand, within GFF2594at 119.615 kb on + strand, within GFF2594at 119.725 kb on - strand, within GFF2594at 119.811 kb on - strand, within GFF2594at 119.854 kb on - strand, within GFF2594at 119.947 kb on - strand, within GFF2594at 120.043 kb on - strand, within GFF2594

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.1875 MOI
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118,422 + GFF2592 0.66 +0.3
118,911 + +0.3
118,992 + -0.0
118,992 + +0.9
118,992 + +0.3
119,005 + +0.5
119,045 + -0.1
119,140 - GFF2593 0.51 +0.1
119,140 - GFF2593 0.51 +0.9
119,455 - GFF2594 0.10 +0.3
119,527 + GFF2594 0.14 +0.4
119,575 + GFF2594 0.16 +0.0
119,615 + GFF2594 0.18 -0.2
119,725 - GFF2594 0.24 +0.9
119,811 - GFF2594 0.28 +0.6
119,854 - GFF2594 0.31 -0.7
119,947 - GFF2594 0.35 +0.2
120,043 - GFF2594 0.40 +0.1

Or see this region's nucleotide sequence