Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2483

Experiment: LB_plus_SM_buffer with Ffm_phage 0.1875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2482 and GFF2483 are separated by 98 nucleotidesGFF2483 and GFF2484 are separated by 156 nucleotidesGFF2484 and GFF2485 are separated by 139 nucleotides GFF2482 - Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-), at 35 to 2,470 GFF2482 GFF2483 - Anaerobic dimethyl sulfoxide reductase chain A (EC 1.8.99.-), at 2,569 to 5,007 GFF2483 GFF2484 - FIG00639146: hypothetical protein, at 5,164 to 5,469 GFF2484 GFF2485 - Hypothetical UPF0257 lipoprotein ynfC precursor, at 5,609 to 6,286 GFF2485 Position (kb) 2 3 4 5 6Strain fitness (log2 ratio) -1 0 1at 1.671 kb on + strand, within GFF2482at 1.728 kb on + strand, within GFF2482at 1.731 kb on + strand, within GFF2482at 1.731 kb on + strand, within GFF2482at 1.731 kb on + strand, within GFF2482at 1.732 kb on - strand, within GFF2482at 1.732 kb on - strand, within GFF2482at 1.807 kb on + strand, within GFF2482at 1.843 kb on + strand, within GFF2482at 1.878 kb on + strand, within GFF2482at 1.948 kb on + strand, within GFF2482at 1.949 kb on - strand, within GFF2482at 1.985 kb on + strand, within GFF2482at 2.063 kb on - strand, within GFF2482at 2.063 kb on - strand, within GFF2482at 2.171 kb on + strand, within GFF2482at 2.172 kb on - strand, within GFF2482at 2.207 kb on - strand, within GFF2482at 2.225 kb on + strand, within GFF2482at 2.226 kb on - strand, within GFF2482at 2.282 kb on - strandat 2.598 kb on + strandat 2.698 kb on - strandat 2.698 kb on - strandat 2.914 kb on - strand, within GFF2483at 2.979 kb on + strand, within GFF2483at 2.985 kb on + strand, within GFF2483at 2.988 kb on - strand, within GFF2483at 3.075 kb on + strand, within GFF2483at 3.164 kb on + strand, within GFF2483at 3.164 kb on + strand, within GFF2483at 3.327 kb on - strand, within GFF2483at 3.461 kb on + strand, within GFF2483at 3.924 kb on + strand, within GFF2483at 4.005 kb on + strand, within GFF2483at 4.005 kb on + strand, within GFF2483at 4.015 kb on - strand, within GFF2483at 4.016 kb on + strand, within GFF2483at 4.073 kb on + strand, within GFF2483at 4.073 kb on + strand, within GFF2483at 4.073 kb on + strand, within GFF2483at 4.074 kb on - strand, within GFF2483at 4.074 kb on - strand, within GFF2483at 4.118 kb on - strand, within GFF2483at 4.216 kb on + strand, within GFF2483at 4.373 kb on + strand, within GFF2483at 4.379 kb on + strand, within GFF2483at 4.379 kb on + strand, within GFF2483at 4.412 kb on + strand, within GFF2483at 4.412 kb on + strand, within GFF2483at 4.520 kb on + strand, within GFF2483at 4.521 kb on - strand, within GFF2483at 4.530 kb on - strand, within GFF2483at 4.530 kb on - strand, within GFF2483at 4.547 kb on + strand, within GFF2483at 4.548 kb on - strand, within GFF2483at 4.548 kb on - strand, within GFF2483at 4.605 kb on + strand, within GFF2483at 4.606 kb on - strand, within GFF2483at 4.660 kb on - strand, within GFF2483at 5.206 kb on - strand, within GFF2484at 5.501 kb on - strandat 5.521 kb on - strandat 5.571 kb on + strandat 5.602 kb on - strandat 5.774 kb on - strand, within GFF2485at 5.774 kb on - strand, within GFF2485at 5.861 kb on + strand, within GFF2485

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.1875 MOI
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1,671 + GFF2482 0.67 +0.7
1,728 + GFF2482 0.69 +0.5
1,731 + GFF2482 0.70 -0.7
1,731 + GFF2482 0.70 +0.8
1,731 + GFF2482 0.70 +0.5
1,732 - GFF2482 0.70 +0.2
1,732 - GFF2482 0.70 -0.4
1,807 + GFF2482 0.73 +0.1
1,843 + GFF2482 0.74 -0.7
1,878 + GFF2482 0.76 +0.4
1,948 + GFF2482 0.79 +0.1
1,949 - GFF2482 0.79 -0.5
1,985 + GFF2482 0.80 -0.4
2,063 - GFF2482 0.83 +0.9
2,063 - GFF2482 0.83 +0.0
2,171 + GFF2482 0.88 -0.2
2,172 - GFF2482 0.88 -0.1
2,207 - GFF2482 0.89 -0.6
2,225 + GFF2482 0.90 -0.1
2,226 - GFF2482 0.90 -0.0
2,282 - +0.8
2,598 + -0.6
2,698 - -0.5
2,698 - -0.6
2,914 - GFF2483 0.14 -0.7
2,979 + GFF2483 0.17 -0.1
2,985 + GFF2483 0.17 +1.4
2,988 - GFF2483 0.17 +0.9
3,075 + GFF2483 0.21 -0.3
3,164 + GFF2483 0.24 +0.4
3,164 + GFF2483 0.24 +0.1
3,327 - GFF2483 0.31 +0.2
3,461 + GFF2483 0.37 -0.2
3,924 + GFF2483 0.56 -0.3
4,005 + GFF2483 0.59 -0.8
4,005 + GFF2483 0.59 +0.2
4,015 - GFF2483 0.59 -0.1
4,016 + GFF2483 0.59 +0.5
4,073 + GFF2483 0.62 -0.3
4,073 + GFF2483 0.62 -0.4
4,073 + GFF2483 0.62 -0.8
4,074 - GFF2483 0.62 +0.1
4,074 - GFF2483 0.62 +0.5
4,118 - GFF2483 0.64 -0.8
4,216 + GFF2483 0.68 +0.1
4,373 + GFF2483 0.74 +0.2
4,379 + GFF2483 0.74 -0.8
4,379 + GFF2483 0.74 -0.4
4,412 + GFF2483 0.76 -0.6
4,412 + GFF2483 0.76 -0.6
4,520 + GFF2483 0.80 -0.5
4,521 - GFF2483 0.80 -0.1
4,530 - GFF2483 0.80 -0.1
4,530 - GFF2483 0.80 +0.1
4,547 + GFF2483 0.81 +0.2
4,548 - GFF2483 0.81 -0.5
4,548 - GFF2483 0.81 -0.0
4,605 + GFF2483 0.83 -0.5
4,606 - GFF2483 0.84 -0.7
4,660 - GFF2483 0.86 -0.9
5,206 - GFF2484 0.14 +1.1
5,501 - +0.5
5,521 - -0.2
5,571 + -0.1
5,602 - -0.1
5,774 - GFF2485 0.24 -0.3
5,774 - GFF2485 0.24 -0.1
5,861 + GFF2485 0.37 -0.3

Or see this region's nucleotide sequence