Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF179

Experiment: LB_plus_SM_buffer with Ffm_phage 0.1875 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF178 and GFF179 are separated by 140 nucleotidesGFF179 and GFF180 are separated by 5 nucleotides GFF178 - L-arabinose isomerase (EC 5.3.1.4), at 169,511 to 171,013 GFF178 GFF179 - L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4), at 171,154 to 171,849 GFF179 GFF180 - FIG01045455: hypothetical protein, at 171,855 to 172,274 GFF180 Position (kb) 171 172Strain fitness (log2 ratio) -1 0 1at 170.220 kb on - strand, within GFF178at 170.342 kb on - strand, within GFF178at 170.914 kb on - strandat 171.158 kb on + strandat 171.225 kb on + strand, within GFF179at 171.297 kb on + strand, within GFF179at 171.404 kb on - strand, within GFF179at 171.434 kb on + strand, within GFF179at 171.737 kb on - strand, within GFF179at 171.835 kb on + strandat 171.836 kb on - strandat 171.836 kb on - strandat 171.856 kb on + strandat 171.949 kb on + strand, within GFF180at 172.668 kb on + strandat 172.721 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.1875 MOI
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170,220 - GFF178 0.47 -0.5
170,342 - GFF178 0.55 +0.1
170,914 - +0.0
171,158 + -0.3
171,225 + GFF179 0.10 +1.2
171,297 + GFF179 0.21 +0.1
171,404 - GFF179 0.36 +1.5
171,434 + GFF179 0.40 -0.2
171,737 - GFF179 0.84 -0.0
171,835 + -0.2
171,836 - +0.4
171,836 - +0.1
171,856 + +0.2
171,949 + GFF180 0.22 +1.3
172,668 + +0.0
172,721 - -0.3

Or see this region's nucleotide sequence