Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1236

Experiment: LB_plus_SM_buffer with Ffm_phage 0.1875 MOI

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1235 and GFF1236 are separated by 419 nucleotidesGFF1236 and GFF1237 are separated by 51 nucleotidesGFF1237 and GFF1238 overlap by 38 nucleotides GFF1235 - 27.5 kDa virulence protein, at 67,401 to 67,988 GFF1235 GFF1236 - Actin-ADP-ribosyltransferase, toxin SpvB, at 68,408 to 70,183 GFF1236 GFF1237 - FIG01046247: hypothetical protein, at 70,235 to 70,402 GFF1237 GFF1238 - 28.1 kDa virulence protein, at 70,365 to 71,132 GFF1238 Position (kb) 68 69 70 71Strain fitness (log2 ratio) -1 0 1 2at 67.488 kb on - strand, within GFF1235at 67.488 kb on - strand, within GFF1235at 67.590 kb on - strand, within GFF1235at 67.624 kb on + strand, within GFF1235at 67.914 kb on - strand, within GFF1235at 68.115 kb on - strandat 68.687 kb on - strand, within GFF1236at 69.052 kb on + strand, within GFF1236at 69.052 kb on + strand, within GFF1236at 69.091 kb on + strand, within GFF1236at 69.091 kb on + strand, within GFF1236at 69.091 kb on + strand, within GFF1236at 69.129 kb on + strand, within GFF1236at 69.130 kb on - strand, within GFF1236at 69.130 kb on - strand, within GFF1236at 69.181 kb on - strand, within GFF1236at 69.291 kb on + strand, within GFF1236at 69.295 kb on + strand, within GFF1236at 69.297 kb on + strand, within GFF1236at 69.297 kb on + strand, within GFF1236at 69.369 kb on - strand, within GFF1236at 69.369 kb on - strand, within GFF1236at 69.396 kb on - strand, within GFF1236at 69.441 kb on + strand, within GFF1236at 69.471 kb on + strand, within GFF1236at 69.476 kb on + strand, within GFF1236at 69.477 kb on - strand, within GFF1236at 69.477 kb on - strand, within GFF1236at 69.561 kb on + strand, within GFF1236at 69.562 kb on - strand, within GFF1236at 69.570 kb on + strand, within GFF1236at 69.570 kb on + strand, within GFF1236at 69.570 kb on + strand, within GFF1236at 69.570 kb on + strand, within GFF1236at 69.575 kb on - strand, within GFF1236at 69.691 kb on + strand, within GFF1236at 69.692 kb on - strand, within GFF1236at 69.795 kb on + strand, within GFF1236at 69.812 kb on + strand, within GFF1236at 69.812 kb on + strand, within GFF1236at 69.918 kb on + strand, within GFF1236at 69.919 kb on - strand, within GFF1236at 70.011 kb on + strandat 70.071 kb on - strandat 70.072 kb on + strandat 70.073 kb on - strandat 70.073 kb on - strandat 70.073 kb on - strandat 70.080 kb on - strandat 70.172 kb on + strandat 70.172 kb on + strandat 70.172 kb on + strandat 70.175 kb on + strandat 70.183 kb on + strandat 70.183 kb on + strandat 70.183 kb on + strandat 70.183 kb on + strandat 70.183 kb on + strandat 70.183 kb on + strandat 70.184 kb on - strandat 70.184 kb on - strandat 70.184 kb on - strandat 70.184 kb on - strandat 70.184 kb on - strandat 70.184 kb on - strandat 70.188 kb on + strandat 70.188 kb on + strandat 70.189 kb on - strandat 70.189 kb on - strandat 70.226 kb on - strandat 70.236 kb on + strandat 70.237 kb on - strandat 70.237 kb on - strandat 70.346 kb on - strand, within GFF1237at 70.346 kb on - strand, within GFF1237at 70.367 kb on - strandat 70.424 kb on + strandat 70.432 kb on - strandat 70.469 kb on + strand, within GFF1238at 70.505 kb on - strand, within GFF1238at 70.597 kb on + strand, within GFF1238at 70.597 kb on + strand, within GFF1238at 70.598 kb on - strand, within GFF1238at 70.598 kb on - strand, within GFF1238at 70.601 kb on + strand, within GFF1238at 70.601 kb on + strand, within GFF1238at 70.601 kb on + strand, within GFF1238at 70.601 kb on + strand, within GFF1238at 70.601 kb on + strand, within GFF1238at 70.602 kb on - strand, within GFF1238at 70.602 kb on - strand, within GFF1238at 70.602 kb on - strand, within GFF1238at 70.602 kb on - strand, within GFF1238at 70.664 kb on + strand, within GFF1238at 70.665 kb on - strand, within GFF1238at 70.665 kb on - strand, within GFF1238at 70.701 kb on + strand, within GFF1238at 70.729 kb on + strand, within GFF1238at 70.927 kb on + strand, within GFF1238at 70.928 kb on - strand, within GFF1238at 70.989 kb on - strand, within GFF1238at 70.989 kb on - strand, within GFF1238at 71.132 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with Ffm_phage 0.1875 MOI
remove
67,488 - GFF1235 0.15 -0.5
67,488 - GFF1235 0.15 +1.8
67,590 - GFF1235 0.32 -0.3
67,624 + GFF1235 0.38 +0.1
67,914 - GFF1235 0.87 -1.0
68,115 - +0.1
68,687 - GFF1236 0.16 +1.0
69,052 + GFF1236 0.36 +1.8
69,052 + GFF1236 0.36 -0.1
69,091 + GFF1236 0.38 +0.4
69,091 + GFF1236 0.38 +0.7
69,091 + GFF1236 0.38 +1.5
69,129 + GFF1236 0.41 +0.8
69,130 - GFF1236 0.41 +0.2
69,130 - GFF1236 0.41 +0.0
69,181 - GFF1236 0.44 -0.0
69,291 + GFF1236 0.50 +0.3
69,295 + GFF1236 0.50 -0.2
69,297 + GFF1236 0.50 -0.2
69,297 + GFF1236 0.50 +0.1
69,369 - GFF1236 0.54 +0.1
69,369 - GFF1236 0.54 -0.2
69,396 - GFF1236 0.56 -0.3
69,441 + GFF1236 0.58 +0.3
69,471 + GFF1236 0.60 +0.3
69,476 + GFF1236 0.60 -0.0
69,477 - GFF1236 0.60 +0.2
69,477 - GFF1236 0.60 -0.3
69,561 + GFF1236 0.65 -0.1
69,562 - GFF1236 0.65 +0.2
69,570 + GFF1236 0.65 +0.8
69,570 + GFF1236 0.65 +0.0
69,570 + GFF1236 0.65 +0.1
69,570 + GFF1236 0.65 -0.4
69,575 - GFF1236 0.66 +0.1
69,691 + GFF1236 0.72 +0.2
69,692 - GFF1236 0.72 +0.7
69,795 + GFF1236 0.78 +0.3
69,812 + GFF1236 0.79 +0.1
69,812 + GFF1236 0.79 +0.3
69,918 + GFF1236 0.85 +0.4
69,919 - GFF1236 0.85 +0.1
70,011 + -0.3
70,071 - +0.7
70,072 + +0.6
70,073 - -0.2
70,073 - +0.5
70,073 - +0.0
70,080 - +1.3
70,172 + +0.6
70,172 + +0.3
70,172 + -0.0
70,175 + -0.4
70,183 + -0.9
70,183 + +0.0
70,183 + -0.5
70,183 + +0.3
70,183 + -0.2
70,183 + +0.4
70,184 - -0.2
70,184 - +0.3
70,184 - +0.2
70,184 - +0.0
70,184 - -0.0
70,184 - -0.4
70,188 + +0.2
70,188 + -0.3
70,189 - +0.1
70,189 - -0.1
70,226 - -0.1
70,236 + +0.1
70,237 - +0.3
70,237 - -0.4
70,346 - GFF1237 0.66 -1.2
70,346 - GFF1237 0.66 +0.2
70,367 - +0.0
70,424 + -0.1
70,432 - -0.1
70,469 + GFF1238 0.14 -0.1
70,505 - GFF1238 0.18 -0.1
70,597 + GFF1238 0.30 -0.7
70,597 + GFF1238 0.30 +0.7
70,598 - GFF1238 0.30 +0.4
70,598 - GFF1238 0.30 -0.1
70,601 + GFF1238 0.31 -0.4
70,601 + GFF1238 0.31 -0.1
70,601 + GFF1238 0.31 +0.4
70,601 + GFF1238 0.31 +0.4
70,601 + GFF1238 0.31 +0.6
70,602 - GFF1238 0.31 -0.3
70,602 - GFF1238 0.31 +0.3
70,602 - GFF1238 0.31 +0.1
70,602 - GFF1238 0.31 -1.0
70,664 + GFF1238 0.39 -1.0
70,665 - GFF1238 0.39 -0.2
70,665 - GFF1238 0.39 +0.4
70,701 + GFF1238 0.44 +0.8
70,729 + GFF1238 0.47 +0.5
70,927 + GFF1238 0.73 -0.1
70,928 - GFF1238 0.73 -0.3
70,989 - GFF1238 0.81 +0.7
70,989 - GFF1238 0.81 -1.6
71,132 + -0.2

Or see this region's nucleotide sequence