Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04220 and ECD_04221 are separated by 392 nucleotides ECD_04221 and ECD_04222 are separated by 17 nucleotides
ECD_04220: ECD_04220 - putative transporter, at 4,496,245 to 4,498,395
_04220
ECD_04221: ECD_04221 - 4-hydroxyphenylacetate 3-monooxygenase, reductase component, at 4,498,788 to 4,499,300
_04221
ECD_04222: ECD_04222 - 4-hydroxyphenylacetate 3-monooxygenase, at 4,499,318 to 4,500,880
_04222
Position (kb)
4498
4499
4500 Strain fitness (log2 ratio)
-1
0
1
2 at 4497.884 kb on - strand, within ECD_04220 at 4497.978 kb on + strand, within ECD_04220 at 4497.991 kb on - strand, within ECD_04220 at 4497.991 kb on - strand, within ECD_04220 at 4498.001 kb on - strand, within ECD_04220 at 4498.226 kb on + strand at 4498.227 kb on - strand at 4498.227 kb on - strand at 4498.227 kb on - strand at 4498.227 kb on - strand at 4498.257 kb on - strand at 4498.312 kb on + strand at 4498.313 kb on - strand at 4498.367 kb on - strand at 4498.396 kb on - strand at 4498.414 kb on - strand at 4498.433 kb on - strand at 4498.470 kb on + strand at 4498.471 kb on - strand at 4498.478 kb on + strand at 4498.478 kb on + strand at 4498.478 kb on + strand at 4498.478 kb on + strand at 4498.479 kb on - strand at 4498.479 kb on - strand at 4498.479 kb on - strand at 4498.479 kb on - strand at 4498.479 kb on - strand at 4498.479 kb on - strand at 4498.529 kb on + strand at 4498.535 kb on - strand at 4498.549 kb on - strand at 4498.564 kb on + strand at 4498.589 kb on + strand at 4498.626 kb on + strand at 4498.627 kb on - strand at 4498.642 kb on - strand at 4498.647 kb on - strand at 4498.647 kb on - strand at 4498.663 kb on - strand at 4498.676 kb on - strand at 4498.789 kb on + strand at 4498.789 kb on + strand at 4498.840 kb on + strand, within ECD_04221 at 4498.841 kb on - strand, within ECD_04221 at 4498.841 kb on - strand, within ECD_04221 at 4498.841 kb on - strand, within ECD_04221 at 4498.841 kb on - strand, within ECD_04221 at 4498.841 kb on - strand, within ECD_04221 at 4498.841 kb on - strand, within ECD_04221 at 4498.844 kb on + strand, within ECD_04221 at 4498.845 kb on - strand, within ECD_04221 at 4498.845 kb on - strand, within ECD_04221 at 4498.845 kb on - strand, within ECD_04221 at 4498.845 kb on - strand, within ECD_04221 at 4498.963 kb on - strand, within ECD_04221 at 4499.165 kb on + strand, within ECD_04221 at 4499.234 kb on + strand, within ECD_04221 at 4499.235 kb on - strand, within ECD_04221 at 4499.293 kb on - strand at 4499.293 kb on - strand at 4499.499 kb on + strand, within ECD_04222 at 4499.511 kb on + strand, within ECD_04222 at 4499.512 kb on - strand, within ECD_04222 at 4499.512 kb on - strand, within ECD_04222 at 4499.512 kb on - strand, within ECD_04222 at 4499.546 kb on - strand, within ECD_04222 at 4499.613 kb on + strand, within ECD_04222 at 4499.613 kb on + strand, within ECD_04222 at 4499.613 kb on + strand, within ECD_04222 at 4499.613 kb on + strand, within ECD_04222 at 4499.613 kb on + strand, within ECD_04222 at 4499.614 kb on - strand, within ECD_04222 at 4499.614 kb on - strand, within ECD_04222 at 4499.614 kb on - strand, within ECD_04222 at 4499.614 kb on - strand, within ECD_04222 at 4499.614 kb on - strand, within ECD_04222 at 4499.614 kb on - strand, within ECD_04222 at 4499.626 kb on - strand, within ECD_04222 at 4499.626 kb on - strand, within ECD_04222 at 4499.673 kb on + strand, within ECD_04222 at 4499.741 kb on + strand, within ECD_04222 at 4499.778 kb on + strand, within ECD_04222 at 4499.778 kb on + strand, within ECD_04222 at 4499.779 kb on - strand, within ECD_04222 at 4499.903 kb on - strand, within ECD_04222 at 4499.903 kb on - strand, within ECD_04222 at 4499.983 kb on + strand, within ECD_04222 at 4499.983 kb on + strand, within ECD_04222 at 4500.273 kb on + strand, within ECD_04222 at 4500.274 kb on - strand, within ECD_04222
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 4,497,884 - ECD_04220 0.76 +0.4 4,497,978 + ECD_04220 0.81 -0.6 4,497,991 - ECD_04220 0.81 +0.3 4,497,991 - ECD_04220 0.81 +0.3 4,498,001 - ECD_04220 0.82 +0.8 4,498,226 + +0.0 4,498,227 - -0.2 4,498,227 - -0.3 4,498,227 - +1.7 4,498,227 - +0.8 4,498,257 - -0.3 4,498,312 + -0.9 4,498,313 - +0.5 4,498,367 - -1.3 4,498,396 - +0.4 4,498,414 - -0.2 4,498,433 - -0.1 4,498,470 + -0.7 4,498,471 - +1.0 4,498,478 + +0.2 4,498,478 + +0.3 4,498,478 + -0.3 4,498,478 + +0.1 4,498,479 - +0.3 4,498,479 - +0.5 4,498,479 - -0.5 4,498,479 - -0.5 4,498,479 - +0.7 4,498,479 - +0.4 4,498,529 + +0.6 4,498,535 - +0.1 4,498,549 - -0.3 4,498,564 + +0.0 4,498,589 + -0.2 4,498,626 + -0.2 4,498,627 - +0.4 4,498,642 - +0.4 4,498,647 - -0.2 4,498,647 - -0.3 4,498,663 - -0.4 4,498,676 - +0.2 4,498,789 + -0.2 4,498,789 + -0.9 4,498,840 + ECD_04221 0.10 -0.6 4,498,841 - ECD_04221 0.10 +0.1 4,498,841 - ECD_04221 0.10 -0.0 4,498,841 - ECD_04221 0.10 +0.9 4,498,841 - ECD_04221 0.10 -0.2 4,498,841 - ECD_04221 0.10 -0.2 4,498,841 - ECD_04221 0.10 -0.7 4,498,844 + ECD_04221 0.11 +0.1 4,498,845 - ECD_04221 0.11 -0.8 4,498,845 - ECD_04221 0.11 -0.9 4,498,845 - ECD_04221 0.11 -0.1 4,498,845 - ECD_04221 0.11 +0.1 4,498,963 - ECD_04221 0.34 +0.3 4,499,165 + ECD_04221 0.73 -0.7 4,499,234 + ECD_04221 0.87 +0.7 4,499,235 - ECD_04221 0.87 -0.4 4,499,293 - -0.2 4,499,293 - +0.4 4,499,499 + ECD_04222 0.12 -0.3 4,499,511 + ECD_04222 0.12 -0.3 4,499,512 - ECD_04222 0.12 -0.5 4,499,512 - ECD_04222 0.12 +0.2 4,499,512 - ECD_04222 0.12 +0.3 4,499,546 - ECD_04222 0.15 +0.1 4,499,613 + ECD_04222 0.19 -0.1 4,499,613 + ECD_04222 0.19 -0.4 4,499,613 + ECD_04222 0.19 +0.0 4,499,613 + ECD_04222 0.19 +0.2 4,499,613 + ECD_04222 0.19 +1.2 4,499,614 - ECD_04222 0.19 +0.1 4,499,614 - ECD_04222 0.19 +0.4 4,499,614 - ECD_04222 0.19 -0.4 4,499,614 - ECD_04222 0.19 -0.1 4,499,614 - ECD_04222 0.19 -0.6 4,499,614 - ECD_04222 0.19 -0.1 4,499,626 - ECD_04222 0.20 +0.8 4,499,626 - ECD_04222 0.20 -0.1 4,499,673 + ECD_04222 0.23 -0.5 4,499,741 + ECD_04222 0.27 -0.1 4,499,778 + ECD_04222 0.29 -0.2 4,499,778 + ECD_04222 0.29 +0.3 4,499,779 - ECD_04222 0.29 -0.5 4,499,903 - ECD_04222 0.37 -0.1 4,499,903 - ECD_04222 0.37 +0.3 4,499,983 + ECD_04222 0.43 +2.1 4,499,983 + ECD_04222 0.43 +1.2 4,500,273 + ECD_04222 0.61 +0.1 4,500,274 - ECD_04222 0.61 +0.1
Or see this region's nucleotide sequence