Experiment: Mixed culture, Halobacteriovorax-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04117 and ECD_04118 are separated by 144 nucleotides ECD_04118 and ECD_04119 are separated by 122 nucleotides ECD_04119 and ECD_04120 are separated by 72 nucleotides
ECD_04117: ECD_04117 - transcriptional repressor for divergent bdcA, at 4,385,766 to 4,386,359
_04117
ECD_04118: ECD_04118 - biofilm modulator regulated by toxins; DUF386 family protein, cupin superfamily protein, at 4,386,504 to 4,386,956
_04118
ECD_04119: ECD_04119 - SopA-central-domain-like hexapeptide repeat protein, at 4,387,079 to 4,388,731
_04119
ECD_04120: ECD_04120 - ornithine carbamoyltransferase 1, at 4,388,804 to 4,389,808
_04120
Position (kb) 4387
4388
4389 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4386.165 kb on + strand, within ECD_04117 at 4386.189 kb on + strand, within ECD_04117 at 4386.189 kb on + strand, within ECD_04117 at 4386.190 kb on - strand, within ECD_04117 at 4386.195 kb on + strand, within ECD_04117 at 4386.195 kb on + strand, within ECD_04117 at 4386.195 kb on + strand, within ECD_04117 at 4386.195 kb on + strand, within ECD_04117 at 4386.195 kb on + strand, within ECD_04117 at 4386.196 kb on - strand, within ECD_04117 at 4386.198 kb on - strand, within ECD_04117 at 4386.518 kb on + strand at 4386.519 kb on - strand at 4386.524 kb on + strand at 4386.553 kb on + strand, within ECD_04118 at 4386.572 kb on + strand, within ECD_04118 at 4386.572 kb on + strand, within ECD_04118 at 4386.639 kb on + strand, within ECD_04118 at 4386.640 kb on - strand, within ECD_04118 at 4386.640 kb on - strand, within ECD_04118 at 4386.794 kb on + strand, within ECD_04118 at 4386.844 kb on + strand, within ECD_04118 at 4388.448 kb on + strand, within ECD_04119 at 4388.842 kb on + strand at 4388.842 kb on + strand at 4388.843 kb on - strand at 4388.924 kb on + strand, within ECD_04120 at 4388.925 kb on - strand, within ECD_04120 at 4388.925 kb on - strand, within ECD_04120 at 4388.925 kb on - strand, within ECD_04120 at 4389.049 kb on - strand, within ECD_04120 at 4389.110 kb on + strand, within ECD_04120 at 4389.110 kb on + strand, within ECD_04120 at 4389.110 kb on + strand, within ECD_04120 at 4389.111 kb on - strand, within ECD_04120 at 4389.120 kb on + strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.121 kb on - strand, within ECD_04120 at 4389.124 kb on + strand, within ECD_04120 at 4389.124 kb on + strand, within ECD_04120 at 4389.125 kb on - strand, within ECD_04120 at 4389.153 kb on - strand, within ECD_04120 at 4389.153 kb on - strand, within ECD_04120 at 4389.153 kb on - strand, within ECD_04120 at 4389.328 kb on - strand, within ECD_04120 at 4389.450 kb on + strand, within ECD_04120 at 4389.451 kb on - strand, within ECD_04120 at 4389.507 kb on + strand, within ECD_04120 at 4389.551 kb on - strand, within ECD_04120 at 4389.583 kb on - strand, within ECD_04120 at 4389.583 kb on - strand, within ECD_04120 at 4389.583 kb on - strand, within ECD_04120
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture, Halobacteriovorax-1 remove 4,386,165 + ECD_04117 0.67 -0.0 4,386,189 + ECD_04117 0.71 +0.3 4,386,189 + ECD_04117 0.71 +0.3 4,386,190 - ECD_04117 0.71 -0.5 4,386,195 + ECD_04117 0.72 -1.3 4,386,195 + ECD_04117 0.72 +0.5 4,386,195 + ECD_04117 0.72 -0.4 4,386,195 + ECD_04117 0.72 -0.3 4,386,195 + ECD_04117 0.72 +0.4 4,386,196 - ECD_04117 0.72 +0.4 4,386,198 - ECD_04117 0.73 +0.2 4,386,518 + +0.3 4,386,519 - -0.5 4,386,524 + +1.0 4,386,553 + ECD_04118 0.11 -0.3 4,386,572 + ECD_04118 0.15 -0.3 4,386,572 + ECD_04118 0.15 +0.6 4,386,639 + ECD_04118 0.30 +0.1 4,386,640 - ECD_04118 0.30 +0.2 4,386,640 - ECD_04118 0.30 +1.1 4,386,794 + ECD_04118 0.64 -0.0 4,386,844 + ECD_04118 0.75 -0.8 4,388,448 + ECD_04119 0.83 +0.1 4,388,842 + -2.2 4,388,842 + -1.5 4,388,843 - -2.2 4,388,924 + ECD_04120 0.12 -2.1 4,388,925 - ECD_04120 0.12 -1.9 4,388,925 - ECD_04120 0.12 +1.8 4,388,925 - ECD_04120 0.12 -2.3 4,389,049 - ECD_04120 0.24 -1.2 4,389,110 + ECD_04120 0.30 -3.9 4,389,110 + ECD_04120 0.30 -2.6 4,389,110 + ECD_04120 0.30 -1.3 4,389,111 - ECD_04120 0.31 -2.0 4,389,120 + ECD_04120 0.31 -3.5 4,389,121 - ECD_04120 0.32 -2.4 4,389,121 - ECD_04120 0.32 -1.4 4,389,121 - ECD_04120 0.32 -1.9 4,389,121 - ECD_04120 0.32 -2.5 4,389,124 + ECD_04120 0.32 -2.5 4,389,124 + ECD_04120 0.32 -2.8 4,389,125 - ECD_04120 0.32 -1.3 4,389,153 - ECD_04120 0.35 -2.5 4,389,153 - ECD_04120 0.35 -0.7 4,389,153 - ECD_04120 0.35 -1.4 4,389,328 - ECD_04120 0.52 -3.3 4,389,450 + ECD_04120 0.64 -1.0 4,389,451 - ECD_04120 0.64 -2.8 4,389,507 + ECD_04120 0.70 -1.2 4,389,551 - ECD_04120 0.74 -1.9 4,389,583 - ECD_04120 0.78 -1.0 4,389,583 - ECD_04120 0.78 -1.4 4,389,583 - ECD_04120 0.78 -2.3
Or see this region's nucleotide sequence